Lachancea thermotolerans: KLTH0F07128g
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Entry
KLTH0F07128g CDS
T01117
Name
(RefSeq) TFIIH/NER complex subunit TFB1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lth
Lachancea thermotolerans
Pathway
lth03022
Basal transcription factors
lth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KLTH0F07128g
09124 Replication and repair
03420 Nucleotide excision repair
KLTH0F07128g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lth03021
]
KLTH0F07128g
03400 DNA repair and recombination proteins [BR:
lth03400
]
KLTH0F07128g
Transcription machinery [BR:
lth03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KLTH0F07128g
DNA repair and recombination proteins [BR:
lth03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KLTH0F07128g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GCIP_N
DUF559
Motif
Other DBs
NCBI-GeneID:
8292716
NCBI-ProteinID:
XP_002554513
UniProt:
C5DKS5
LinkDB
All DBs
Position
F:complement(620327..622192)
Genome browser
AA seq
621 aa
AA seq
DB search
MSHSGAAVFKKVSGILTIDEEASPAELLWRSTDGDKTHKVALNTIDKLQATPASSEKMML
RLIGKANEAKKRKDADGNEVKAPLPSHVFSFNNRTVMDNIKETLQLIIARYKDEEVFEEK
KRKESSLAPAPSEAAPLINTSTLDDSLSREKLLTNLKLQQSLLKENKGLMKTFQEAVINS
GLPPDEFWSTRIPLLRAFALTTSQRTGPYNVLSTIKPVASSDNKVNVSVSREKIMTIFQT
YPIVKKAYDDNVPKNFKEQEFWARFFSSKLFRKLRGERIMQSDRGDMIIDRYLTLDQEFD
RKDDEMLQHPVKKLIDLDGNQYDDPERKGNKPDFTMIPGVDVNGNTDGVVDILKGMNRLS
QKMIKSLENEYSRTNLAADDADKEEREELLYSDLEEEDEATYIEIKVKQRMAAVRETAGT
EHKGERFKVGTKEISHQLNLLLDGLTKSIDLTKVANDDKKANNTANQNVIKAVKINAKQA
KNTNFNAVVGANTGITTIESTKEIETPLPGDLLESCRVLHGTCCEFLKHFYIHFQSGEAR
QAPTVKKLYGFLKQCPEKVNKLLNKVQGSTDKQGETLASSCNAYLSSVLGSLNLAIEKYE
LAVAEANAANAANAASSAEVV
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcccactcgggcgccgcagtattcaagaaggtctcagggatcctgactatagatgaa
gaggcatcgccagctgagctgttatggaggtcaaccgatggtgacaagacgcataaggtc
gcattgaacaccatcgacaaattgcaagctacgccagcgtctagcgaaaagatgatgcta
aggcttataggcaaagcgaatgaagccaagaaacgcaaagatgctgatggaaatgaggtc
aaagctccattacctagtcatgtattctcattcaacaatagaactgtgatggacaatatc
aaagagactcttcagcttattattgcccgttataaagacgaagaggtttttgaggaaaaa
aagcgcaaagagtccagcctcgcgcctgcgccttccgaggctgctcctttgatcaacacc
tcaacgctggacgactctctctctcgcgagaagcttctcacgaacctcaagcttcagcaa
tctttactaaaagaaaataaaggcttaatgaaaacgtttcaagaagctgtcataaattca
gggctgccgcctgatgaattctggtctaccaggattccacttttacgagccttcgctctt
accacttctcaaagaacgggtccttacaatgtcctctcgacaatcaaacccgtggcatca
tctgacaacaaggtcaatgtgagtgtatcaagagagaaaattatgactatcttccaaacc
tatccgatcgtgaagaaggcgtatgatgacaatgtgcctaaaaacttcaaagagcaggag
ttctgggctcgatttttctcgtccaaattattccggaaactgagaggtgagcgaattatg
caaagtgaccgtggtgatatgatcattgatcggtaccttactctagatcaagaatttgac
agaaaggacgacgaaatgctacaacacccggtcaaaaagctcattgacttggacggtaac
cagtatgacgacccagaaaggaaaggaaacaagccagactttacaatgataccgggggtt
gacgtgaacggaaatacagatggagttgtagatatcctgaagggcatgaacaggttaagc
caaaaaatgatcaagtcgttggagaatgagtattctagaacaaatctagctgctgatgat
gcagataaggaagaacgagaagagctgctctatagtgaccttgaagaggaggatgaagca
acttacatagagataaaggttaagcaacgaatggccgccgttagagaaactgctggtaca
gagcataaaggtgagagatttaaagtgggtacgaaagaaatatcccatcaacttaatttg
ctgctcgacgggctaacaaagtcaatcgacttaacaaaggttgccaacgatgataaaaaa
gctaataacactgctaatcagaacgttataaaagccgtcaaaattaatgccaaacaagcg
aaaaacaccaacttcaacgcagtggttggagcgaatactggtataacgactatcgagtca
acaaaggaaattgaaacccctttacctggtgacctattagaaagctgccgtgtcttacac
ggaacttgctgtgagtttttgaagcacttttatatccactttcagagtggtgaagcccga
caagcacccacggtcaaaaaactgtatggatttctcaagcaatgcccagaaaaggttaat
aagctacttaacaaggtccaaggctcgacagacaaacagggtgaaacgctagcgagtagc
tgcaatgcatacctgagctcagtgctaggctcattgaatctggccattgaaaagtacgag
cttgctgtagcagaagcgaatgcagctaatgcagcaaatgcggcgagctctgccgaagta
gtttag
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