Lachancea thermotolerans: KLTH0F13772g
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Entry
KLTH0F13772g CDS
T01117
Name
(RefSeq) DEAH-box ATP-dependent RNA helicase PRP22
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0F13772g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lth03041
]
KLTH0F13772g
Enzymes [BR:
lth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KLTH0F13772g
Spliceosome [BR:
lth03041
]
Complex C
Other components
Step II factors
KLTH0F13772g
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
ABC_tran
AAA_19
GIPC1_GH2
nSTAND3
SRP54
AAA_30
Sigma54_activ_2
ResIII
TsaE
Flavi_DEAD
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
8293012
NCBI-ProteinID:
XP_002554786
UniProt:
C5DJ60
LinkDB
All DBs
Position
F:1130237..1133581
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AA seq
1114 aa
AA seq
DB search
MVSVKSEISAIVGIKDPSVSEFLYDICSKSLSIEDFSRKIQDLDVGIPAEKCTKVYQLVK
NSVNKTGNNAQKKVAEILEKSVGVSDPIVVDFVVDICSKCPTYHEFESRLEEMDSGLQKE
VLIPIFTALKGHGFKHETFDVLSMPDEKIAWEPTAKDDISRTKRGSFDEANLDASPAIDK
IYPGVVRKLVGFGCFVRISGTKDPRCDGLVHISEMADRRINDPSEVVSLGQRVFVKVIKV
QKNGKISLRLKNINQNTGIEQNTDIEQYQRRGRGAEKKATITTKRKLTSPERWEIRQLIA
SGAASTDDYPELNEEVEQVTEMFEKPRKVSPEEIDVELNTDDEPQFLKGQTDVTKKHEMP
TVSKIPQGSLTRTALKGSDVMNQHRAERLRKKKELEQEDRRRRLTDDPSIKDQTEYNNKQ
RSLTAWERSRTRENIEYGKRTSLPIKAQRETLPVFKLKRQLIEAVKENQFLVIIGETGSG
KTTQITQYLDEEGFSKNGLIGCTQPRRVAAVSVAKRVAEEIGCRVGEDVGYTIRFEDETS
PKTRIKYMTDGMLQREALMDPEMKNYSVILLDEAHERTVATDVLFALLKKAALRRPDLRV
IVTSATLDAEKFSSYFLQCPIVKIPGKTFPVEVLYSQTPQMDYIESALDTVMEIHINEGR
GDILVFLTGQEEIDTCCEILYERVKTLGDAIQRLLILPVYSALPSEVQSKIFEPTPEGCR
KVIFATNIAETSITIDGIYFVVDPGFAKINTYNPRIGMEQLIVSPISQAQANQRKGRAGR
TGEGKCYRLYTESAFRHEMMPNTVPEIQRQNLAHTILMLKAMGINDLLHFEFMDAPPRAS
MTSALEDLYNLQALDDEGRLTKSGRLMSLFPMEPALSKALIESSHKGCSDEVSTIISMLS
VQNVFYRPKDKQQEADSKKARFHHPYGDHLTLLNVYNRWREDNYSKSFCVNNYLHERHLR
RAREVKTQLNNIFNKLKLPMRSCGGDPNLIRRTLVSGFFKNAAKRDSEAGYKTVTDGTSV
SVHPSSALFGKGYDYVIYHSLVLTSKEYMSHVTSIEPHWLVESAPHFYKVIGAESESRKR
AKIAPLYNKFSQSQDSWRLSSMRQTKEKALGIRR
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggtttcggtgaagtctgagataagcgcgatagttggtatcaaagatccctcagtttct
gagttcctttacgatatttgctctaagagcttgagtatcgaagacttctcacgaaagatt
caagaccttgatgttggcataccggcagagaaatgcacgaaagtttaccagctagttaag
aattcggtgaacaaaaccgggaataacgctcaaaaaaaggtcgccgaaattttggaaaaa
agcgttggcgtcagtgatccaatagtggtagatttcgttgttgacatatgttccaagtgt
cctacataccacgagtttgaatcccgacttgaagagatggatagcggtcttcagaaagaa
gtattaatacctatttttactgccttgaagggccatggtttcaaacatgaaacattcgat
gtgctttctatgccagacgagaagatcgcttgggaaccaaccgctaaggacgatatcagc
cgcactaagagaggttcttttgatgaagctaatttggatgcttcccccgcaatagataag
atatatccaggtgtggttagaaagctcgtgggattcggctgctttgtgcgcatttcgggc
acgaaggatcctcgttgcgatggcttggtacatatttccgaaatggcagaccgaaggatc
aatgatccttcagaggtggtatcgttgggtcagcgcgttttcgtcaaagtaataaaagta
caaaaaaatgggaaaatctcactgcgattgaagaacatcaatcagaacactggcatcgaa
caaaatacagatattgagcagtaccagcgccgcgggagaggtgctgagaaaaaggcaacc
attactactaaaagaaaattaacgtccccagaaaggtgggaaattcgtcagttaatagct
agtggagcagcctctacagatgactatcctgaactcaacgaagaagttgagcaagttacg
gagatgtttgaaaaacctcgcaaagtctcgcctgaagaaatcgatgttgagctcaacaca
gatgatgaaccgcaatttttgaaaggccaaacagacgttactaaaaaacacgagatgcct
acggtctctaaaatcccacagggctcacttacaaggactgctttaaagggctcagacgta
atgaaccaacatcgagcggagaggttgcgaaaaaagaaggagcttgagcaagaggatcgc
aggaggcgcttaactgatgacccgtcaatcaaagatcaaacggaatacaacaataaacaa
aggtctctcactgcatgggaaagaagcaggacaagagagaatattgaatacggaaaaaga
acgagcttgccaataaaagctcaaagggagactctccctgtcttcaagctgaaaaggcag
ctcatcgaagcggtcaaagaaaatcaattccttgtcattattggtgaaacaggttcagga
aagacaactcaaatcactcagtacttagacgaggagggatttagtaaaaacggcttaatt
gggtgcacacagcccagaagagttgcagcagtttcggttgctaagcgtgttgcagaagaa
attggatgcagagttggtgaagatgtgggctacacgattagatttgaagatgagaccagt
ccaaaaactaggattaaatacatgacggatggtatgcttcaaagagaagcattgatggac
cctgagatgaaaaactactctgtgatattgttagatgaagcccacgaaagaacagtggca
actgatgttctttttgcgctactcaaaaaggctgctttacgcaggccagatctgagggtg
attgtgacatcagcaactttagatgctgaaaagttttcaagctactttttacaatgtcct
attgtcaaaattccagggaagacttttccagtagaggtgctatattcccaaactccacag
atggactacatcgaaagtgcgctggatacagtcatggagatccatatcaatgaagggcgt
ggcgatattttagtctttctcactggccaggaagagatcgacacttgctgtgaaattctt
tatgagcgagttaaaactttgggcgacgccatacagaggctcttgatccttccagtgtat
tcggctttgcctagcgaagtacagtcaaaaatattcgaacccacgccagaaggatgtaga
aaagtcatctttgccaccaacattgcagaaacttcaattacaatcgacggaatttacttc
gtggttgaccctggttttgcaaaaataaatacttacaaccctcgaatcgggatggagcag
ttgatagtatcgccaatatcccaagctcaagctaaccagagaaagggccgtgctggtaga
actggagaggggaagtgctatcggctctatacggaatctgcttttcgtcatgagatgatg
ccaaatactgttccagagatacaaaggcaaaatttggcccatacaatactaatgctcaaa
gctatgggaatcaacgacttgttacattttgagttcatggatgctcccccgagagcctca
atgactagtgctttggaagacctatacaatctacaggcccttgatgatgagggtagactt
acgaaatccgggcgcctaatgtcactttttccaatggaacctgccttgtccaaagcttta
atcgaatcttcacataagggctgctctgatgaggtatctacaattatatcaatgctttcg
gttcaaaacgttttttacaggccaaaagacaaacaacaggaagctgactcaaagaaggca
aggtttcatcatccatacggagaccacctaacacttttgaacgtatacaaccgctggcgg
gaagacaactactcgaagtcgttttgtgtgaataactatcttcatgagcgtcacctgagg
cgtgcaagagaagtcaaaactcaacttaacaacattttcaataagctgaagctgcccatg
cgtagctgcggcggcgaccctaatcttatccgccgtactctggtctcggggtttttcaaa
aatgccgccaagagagactctgaagcaggatacaagactgttacagatggtacctctgta
agcgtgcatccctcaagcgcactcttcggaaagggatacgattatgttatttaccatagt
cttgttttgacgtcgaaagaatacatgtcgcacgtcacctcaatagagcctcattggctg
gttgagagtgcccctcatttttataaagtcattggagcagagagcgagtcaaggaaaaga
gcaaaaatagctcctctctacaacaagttctcgcaaagtcaagattcctggaggctaagc
tcgatgcgtcaaactaaggagaaagctttggggattagaagatga
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