Lachancea thermotolerans: KLTH0F17050g
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Entry
KLTH0F17050g CDS
T01117
Name
(RefSeq) ATP-dependent RNA helicase DBP5
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03013
Nucleocytoplasmic transport
lth03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
KLTH0F17050g
03015 mRNA surveillance pathway
KLTH0F17050g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0F17050g
Enzymes [BR:
lth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KLTH0F17050g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
KLTH0F17050g
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-GeneID:
8293159
NCBI-ProteinID:
XP_002554926
UniProt:
C5DJK0
LinkDB
All DBs
Position
F:complement(join(1380459..1381888,1381971..1381977))
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AA seq
478 aa
AA seq
DB search
MTDTSKKADAADLLASLNIESKKDQAPDAKTVEQKEQSAPEEQGVPKDETADQKKKEQDS
NLVKSEYEVKVKLADLQGDPNSPLYSIKSFEELGLAPELLKGLYAMKFQKPSKIQERALP
LLLHNPPRNMIAQSQSGTGKTAAFSLTMLSRVDPAVPQTQAICLAPARELARQTLEVIQE
MGKFTKISSQLIVPDSFEKNKPVNAQIVVGTPGTVLDLMRRKMIQLGQVKVFVLDEADNM
LDKQGLGDQCLRVKKFLPKSAQLVLFSATFDDGVRNYARKVVPDANSLELQRNEVNVAAI
KQLFMDCTDENNKFEVLTELYGLLTIGSSIIFVQTKQTANVLYAKLKQAGHQVSILHGDL
QASERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTTFQGKADPSTYIHRI
GRTGRFGRTGVAISFVHDKKSFEVLTAIQKYFGDIEMTRVPTDDWDEVEKIVKKVLKQ
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgactgacacttcaaagaaagccgatgcagctgacctgctagcgtctttgaacatagaa
tcgaagaaggaccaagctcccgacgctaagaccgttgagcaaaaagagcaaagcgctcct
gaagagcagggcgttcctaaagatgagactgctgaccagaaaaagaaagagcaagactcg
aacttggttaagtctgagtacgaagtcaaagtcaagctggccgacctgcagggtgatcca
aactctcctctgtacagtatcaaatctttcgaggagctaggtttggcgccagagcttctc
aaggggctttacgccatgaagttccagaaaccttccaagattcaggagagagcccttcct
ttgctgcttcataacccacctagaaacatgattgcgcagtcccagtcgggcacaggcaaa
actgctgccttctctctcacaatgctgtcacgcgtcgacccagcagtgccccaaacgcag
gcaatttgcttggctcctgcaagagaacttgccagacagacgttggaagttatccaggaa
atgggaaagtttactaagatctcctctcagcttattgtcccagactctttcgagaaaaac
aagcctgtcaacgcgcagatcgtagtgggtacacccggaactgttttagacctgatgcgc
cggaaaatgatccagctaggccaggtcaaggtgtttgtgctcgacgaagcagacaacatg
ttggataaacaggggctcggagaccaatgtctgcgagtcaagaagttcctgcccaagtca
gcgcaattggtgcttttctcagcgacgttcgacgatggtgtgaggaactacgcacgcaaa
gtggtgccagatgccaactcgctggagctgcaaagaaacgaagttaatgttgcagctatc
aaacagctgttcatggactgtactgatgagaacaacaagttcgaggtgctgacggagttg
tatggactgttaaccattggttcctccattattttcgtgcagactaagcagacggccaat
gtcctgtatgccaagctgaaacaggcgggccaccaagtctctatcttgcacggtgacctg
caagcctcagaaagagaccgcttgatcgacgatttccgtgaaggccgctccaaggtctta
atcactacaaatgtgttggctcgtggtattgatatcccaactgtgtccatggtggtcaac
tacgatcttcctacaaccttccagggcaaagctgacccctcaacctacattcatcgtatc
ggcagaactggcagatttggccgtacgggtgttgccatctcgttcgttcacgacaagaag
tcctttgaggtgctgaccgcaatccagaagtacttcggtgacattgagatgacgcgtgtt
cccaccgatgactgggatgaggtcgagaaaattgtaaagaaagttttgaagcagtaa
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