Lachancea thermotolerans: KLTH0F17974g
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Entry
KLTH0F17974g CDS
T01117
Name
(RefSeq) DEAH-box RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0F17974g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lth03041
]
KLTH0F17974g
Enzymes [BR:
lth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KLTH0F17974g
Spliceosome [BR:
lth03041
]
Complex C
Other components
Step II factors
KLTH0F17974g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_14
PhoH
Flavi_DEAD
T2SSE
AAA_16
SLFN-g3_helicase
Cas3-like_C_2
ABC_tran
AAA_30
NACHT
SRP54
Motif
Other DBs
NCBI-GeneID:
8293201
NCBI-ProteinID:
XP_002554966
UniProt:
C5DJP0
LinkDB
All DBs
Position
F:1451196..1454522
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AA seq
1108 aa
AA seq
DB search
MDEELVGQIQTHTSSNVTVNFVKLLRNLAKVHSHDVDKFIKACMALGKFKGQESFLSELH
SSFTSGTARGVQQNGIMGPEHRVLGVAMKPRPPKKSSQPPRRKTRILNFETEEEETLDSA
SNSKNTTCLRGQTNSGASFKKLSKDRAQRLKEFSVESVGQFELTSPVTSIERSFPELISF
ASAESNAPVLEHHSSSEQSSDEYTGEAMSDSQVLEEDRDWYDHDDDYGNQVPDITSVDFE
RDASFSKEAVRKENKDLNGDLKSQIHLTAVTSSQRKSLIPPFLMSYNDDTPTLANIGLLD
SSQGASNRRIVDPIRNPESEFSLNAKKGSRMVAERRTREVHKAKIEETTDLRGTAIGEVM
GVKEKPAGNSDLEPKEKNSSKNLETSYEHIQEVRKSLPAYQVRSELLQLIRDNQVVVVIG
ETGSGKTTQLAQFLNEDGFCNSGRLVGCTQPRRVAAMSVATRVAMEMGVELGNEVGYSIR
FEDKTSKDTKIKFMTDGILLRETLVSEMLDKYSCIIMDEAHERSLNTDVLFGILKNLLSK
RRDLKLIITSATMNANRFSRFFGAAPQFTIPGRTFPVQVVYSRHPVSDYVESAIVQACKI
HLSTPVSNGDILIFMTGQEDIEATCAGVYEKLLDVYAKRSGKQQLNQPEDIEILPIYSAL
PADVQGKIFEPTPNKRKVVVATNIAETSLTVEGVRYVIDCGYSKLKVYNPQIGLDSLQIA
PISMASANQRSGRAGRTGPGFAYRLYTEDSFFDDMYVQTIPEIQRTNLSNTLLLLKYLGV
NDIMAFPFVDPPPEQIIMTSLFELWTIGALDNFGNLTELGKQMAAFPLQPSLSKMLLVSS
QNGCSEEILTIVSMLSVPQVFYRPKEREKESDQCRTRFFVPESDHLTLLNVYSQWKANSY
SSHWCRRNFLQFKSLQRAREIRRQLYTLMNKKKVPVVSSGTDWDAVRKCICAGYAHQAAK
LSGLSRYTQLRNGLELRVHPTSALFGAGDLPSYVVYHELLLTTNEYINTVTAVDPDWLMN
YGVLFYNVKRRVEDEEFYTEEIHEKPKDSIDMMIEQFEMKKNIITRQIKRDSDVVAERQS
QKKVVNDKRTFPSGASKVSIGFKKRRPL
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagagcttgtcggccaaatacaaacacatacaagctccaacgtgacagtcaac
tttgtgaagctgctgaggaacctggccaaagttcatagtcatgatgtcgataagttcata
aaagcttgtatggctttaggcaaattcaaagggcaggaaagcttcttgtccgagctgcat
tcttctttcacttcaggcacagcgagaggcgtacagcaaaatggaattatgggtcctgaa
catagggttcttggggtagctatgaagccgagaccgcccaaaaagtcaagtcagccacct
cgtaggaagaccaggatcctgaacttcgaaactgaagaggaagagaccttagacagcgct
tcgaattcaaaaaatacaacttgtctgcgaggccaaaccaacagcggtgcgagcttcaaa
aaattgagcaaggatcgtgctcaaaggcttaaggagttctctgtggaatctgtgggtcag
tttgaattaacaagccctgttactagcattgagcggtctttccctgagttgatcagcttc
gcaagtgcagagtctaacgcgcccgtcttggaacatcattcatcgtccgaacagtcctca
gatgaatatactggtgaggcaatgagcgatagtcaggtactcgaagaagatagagactgg
tatgaccacgatgatgattacggaaaccaagttccagatattactagtgttgatttcgaa
agagatgcttccttcagcaaagaggctgttcgaaaagaaaacaaagacctcaatggagat
ctcaaatctcaaattcacttgactgccgtgacttcaagccagcgaaaaagtttgattcca
cctttcttgatgagctacaatgacgacacgcctacactggcgaacataggacttctggac
agttctcagggcgcctccaatcgccgaatcgtcgaccctataagaaaccccgaaagtgag
ttttctctcaatgcaaagaagggaagtcgcatggtggcagaaaggagaacaagagaagtg
cataaagctaaaattgaggaaactactgacctacgaggcactgctatcggagaagttatg
ggggtgaaagagaagccggccggcaacagcgaccttgaaccaaaagaaaagaacagtagt
aaaaatttagaaacttcttatgagcatatccaagaagtcaggaaatctctccctgcctat
caagtgcggtctgagcttctccaattgataagagacaatcaagtcgtagtggtcattggt
gagacaggttccggtaaaaccacacaattggctcaatttttgaatgaagacggattttgt
aacagtggacgtttggttgggtgtactcagcctcgtcgtgttgctgccatgtccgtcgca
acaagagttgcaatggaaatgggtgttgaactgggcaatgaagttggatattccattcgt
ttcgaggacaaaacttctaaggatacaaaaatcaagtttatgacggatggtatactcctt
agggaaacgcttgttagcgaaatgcttgacaaatacagctgcataatcatggatgaagcg
catgaaagatccttgaacacagacgttttgtttggcatacttaaaaatttactctcaaag
aggagagacctcaaattgattataacatctgctaccatgaatgcaaacaggttttctcgg
ttttttggggcagctccgcaattcactattccgggcagaacttttccagtccaagttgtg
tattcgagacaccctgtaagtgactatgtggaatccgcaatagttcaagcgtgcaaaata
catctctcaacgcccgtttcaaatggcgacatattgattttcatgacagggcaagaagat
attgaagcaacatgcgccggagtgtatgaaaagctcttggatgtttacgcaaagcggtca
gggaagcagcagctaaaccaacctgaagacatcgagattcttccaatatattcagctctc
cctgcagacgttcaaggcaaaatcttcgaaccaacacctaacaagaggaaagttgttgtg
gctacaaatatagcagagacttcccttactgttgaaggcgtgaggtacgttatcgattgc
ggatattcaaaactcaaggtttataatccgcaaattgggcttgatagtctccagattgcg
cctatatcaatggctagtgccaaccaacgatcaggaagagcaggccgtactggtccgggg
tttgcatacagattgtacactgaagattctttctttgatgacatgtatgttcaaacgatt
cctgaaatccaaagaaccaacttatcaaatacactactgcttctaaaatacctgggagtt
aatgacattatggcatttccttttgtggatcccccgccagagcagataatcatgacctca
ctatttgaactttggactataggcgcacttgacaatttcggaaatttaacagagctgggg
aaacagatggcggcatttccgttgcaaccctcgctctctaagatgttgctcgtctcttca
caaaacggctgcagcgaagaaatcttgactatcgtgtcaatgctatccgtgccacaagtt
ttttacagacccaaagaaagggaaaaggaatcagaccagtgcagaacgcgattttttgtt
ccagagtcagatcaccttacattactgaatgtttattctcaatggaaggccaatagttac
tcttcgcattggtgtaggaggaactttcttcaattcaaatcacttcaaagggccagagaa
attcgcaggcagttatacactttaatgaacaagaagaaagttcctgtggtttcttcaggt
acagactgggatgctgtaaggaagtgcatatgtgccggttatgctcatcaagcggccaaa
ctctcgggtctaagcaggtatacacagttgagaaatgggctagagctgcgagttcatcca
acaagtgcgttgttcggggctggagaccttccttcatacgtcgtttaccatgaactgctg
ctgactactaatgagtacatcaataccgtaactgcagtagatccggattggctaatgaat
tacggcgtgctattttataatgtcaaaagacgcgttgaagacgaggagttttacactgag
gagatccacgaaaaacccaaagacagcattgatatgatgatagagcagtttgagatgaag
aagaacatcataacgcggcaaattaagagggactcggatgtcgttgctgaaaggcagtcc
cagaaaaaggttgtgaacgataaacgcactttcccaagtggcgcatccaaggtaagtatt
ggcttcaaaaagaggcgtcctttgtga
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