Lachancea thermotolerans: KLTH0G03520g
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Entry
KLTH0G03520g CDS
T01117
Name
(RefSeq) mRNA splicing protein SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lth
Lachancea thermotolerans
Pathway
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0G03520g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0G03520g
03041 Spliceosome [BR:
lth03041
]
KLTH0G03520g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
KLTH0G03520g
Spliceosome [BR:
lth03041
]
Complex B
Other components
Prp19-related factors
KLTH0G03520g
Complex C
KLTH0G03520g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_15
TPR_1
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
8293454
NCBI-ProteinID:
XP_002555190
UniProt:
C5DLU2
LinkDB
All DBs
Position
G:272176..274626
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AA seq
816 aa
AA seq
DB search
MDTGSIARFVTSKEDIAYEYELQNDGDNLVVWKRYLEHKKAQENDSALAWIYERCCYQFP
GSAEMWLEYMTWRISLLSGANSILYAEEFEKCNKLFEKAMYLCHQSVDLWELYLRHVMAQ
RNLQLIRVLLNKALRHLHLEHHIRVWGMVVEFIENAVLDPRVASEVEEDIDGLVSESFFK
TDDQSGVADVWSSHILSRYLQVAEDLEHALYLLGLTQDHTEIIKAYRRHIFDASFSPTTH
TAFEFHCTYLQSLEKSSSHSEYIQAMSQCMKLFPEQKSLLIIRLAKYYIGKADLPAARST
LLDALASTVTSKSFSEIYEFLVKLLEAFAASSIQHAQIAASSEDREQLESDLAFNMDLLE
YLIESHSLLLNDLKLRQNVNDVGTWLERAEFFRSPAEKAKVYTDAITKIDHLKTTTPGSF
GELWCCLAQLYTISGKLDSARETYDRGLRVPYRSLKDLENIWCAWAEMELECGRIQASIK
LLREALKVPKNAELVVDAFNTGNGAMPAKAITFMSQRLWTLFIDLLESTSESSTGAEETV
QAYEQLIALKLATPLNFINYSHFLQEQGQWDQSFKIYERAISIFPGQTRFEIWSLYLQQS
LDRKRPTETMRDLFEQALKVVEEDIDCPSLFIFCSDFEHSCGLEKRSIDILLRGCRECKS
LSAKVTLWDACISSSKERLGAESSRPLYEECIKMLPNSKATSFALEFAKTEVVLGDYERA
RAVLRFGANLIHPDRNVQLWDYWGEFELKYGDKSTYKEMLKLKRELASSMKVSTEAVSQR
NGNIAFVSSNTQPKNSEAPPTTAQKAENPEEIILDI
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggatacgggttctatcgctcgttttgtcacgagtaaagaagatattgcatatgagtat
gagctccagaatgacggggacaacttagtggtctggaagcgttacttggaacataaaaag
gcacaggagaacgatagcgcacttgcatggatctacgagcgctgctgctatcagttccca
ggctccgccgaaatgtggttggagtacatgacgtggcgaatttctcttctgtcaggtgca
aattccattttatacgcagaagagttcgagaagtgtaataagctttttgagaaggcgatg
tatctgtgccaccagagcgtggacctttgggagctttacctgcgccacgttatggcacag
agaaacctacagcttattcgtgtcttactcaacaaagccctgcggcatcttcacctggag
caccatattcgtgtatggggtatggtggttgagttcatcgaaaatgctgtactggacccc
cgagtagcatcagaagttgaagaagatatcgatgggctggtgagtgaatcatttttcaaa
accgacgaccagagtggtgttgcggacgtgtggagctcacacatactatccaggtaccta
caagttgcagaggatctagagcacgctctttatttgttaggccttactcaggatcataca
gagattattaaagcttaccggagacatattttcgacgcgtcgttttcgccaaccacccac
acagcatttgagttccactgcacctatttacaaagcctcgagaaatcgagctcccactca
gagtatatccaggctatgtcacagtgcatgaagttgtttcccgagcaaaagtcacttctc
ataattaggctcgccaagtactatattggaaaagcagacctccctgcggcaagaagcacg
ctattggatgcgcttgcctctactgttacatctaagtcattttcggagatatatgagttc
ctcgtaaaactactggaggccttcgccgcgagcagtattcagcatgcgcaaatagctgcc
agttctgaggaccgcgagcagctagagtccgacttagcctttaatatggacttgctggaa
tatttaatagagtcgcattcattgttactgaacgacttgaaactaaggcagaatgtcaat
gatgtcggaacatggctagaaagagccgaatttttccgttcccccgcagaaaaggcgaaa
gtttacacagacgcgattaccaagattgaccacttaaagacaacaaccccgggctctttc
ggcgagctttggtgctgccttgctcagctttataccatctctgggaaactcgattctgcg
cgggagacttacgaccgcggcctacgagtcccgtataggtctttgaaagacttggaaaat
atatggtgcgcatgggctgagatggagcttgagtgtggccgaattcaagcgtccataaaa
ctattgagagaagcactcaaagtaccaaaaaacgcggaactcgtggttgatgcattcaat
accggcaatggtgcaatgcctgccaaagccataacatttatgtcacagcggctctggact
cttttcatagacttgttagaatctacttctgaatcttctacaggagccgaggaaactgtt
caagcctacgagcagctgattgctttgaagctagcaacaccactgaatttcataaactac
tctcacttcctccaggaacagggacaatgggaccaaagcttcaaaatttatgagcgcgct
atatcaattttccccggacaaacacggtttgagatttggtctttgtatttacagcagtcc
ttggatagaaaaaggcccactgaaactatgcgagatcttttcgagcaagctttgaaggtt
gtcgaagaagacatcgactgcccgtcactattcatattctgcagtgattttgagcactcc
tgcggccttgaaaagagatctatagacattctccttcgcggttgcagggagtgcaaaagc
ctgtccgcaaaggtgacgctatgggacgcctgcataagttcttccaaagagcgtttagga
gctgagagttcaagacctctttatgaagagtgtatcaaaatgcttcccaactctaaagca
acatctttcgcgcttgaattcgccaaaactgaagtcgttttaggagactacgagagggca
cgcgccgtcttaaggtttggcgctaatttaatacaccctgaccggaatgtccagctctgg
gattactggggtgaatttgaactcaaatacggcgataaatcgacttataaggaaatgttg
aaattgaaaagggagcttgcaagtagcatgaaagtgtcaacggaagcggtctcacagagg
aatggtaatattgcatttgtgtcctcaaacactcaacccaagaattcagaagcgcctccc
acaactgctcagaaagcagaaaatcccgaagagatcatcttggacatctaa
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