Lachancea thermotolerans: KLTH0G06248g
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Entry
KLTH0G06248g CDS
T01117
Name
(RefSeq) mRNA-binding translational repressor SSD1
KO
K18748
protein SSD1
Organism
lth
Lachancea thermotolerans
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0G06248g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
KLTH0G06248g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
DUF5774
Rrp44_S1
MAP17
Motif
Other DBs
NCBI-GeneID:
8293577
NCBI-ProteinID:
XP_002555309
UniProt:
C5DM61
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All DBs
Position
G:494464..498141
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AA seq
1225 aa
AA seq
DB search
MSSSDRKNEDRFVATTGGRKNPKQIHIAHRRSASELTNLMIEQFTLQRQLEIVQAQQQQL
IAQQQQLAQQSGQYLNPVGSGNASLGAPGGPIPSFVPQPPHPHYNAPSPSPSQGNRSRSH
SRNSSGYYNNNEFAPPGHRKTGSQSSVYGHSRRHSLGLSEAKKAAAEEQAKRASGSGISI
KIDDAEKSESVESPLSNAIEQSTYKFPANTGDAQRGTTPQTSRTSHMSPQKSFQFPSVPS
NNKENREEFSNVSTPNRNANAKGKDVSGINNNWRLQQQPTPQSNQNTPSHPFHHKKSQSR
EAPFGGLEPPPVFQPGHRSRNSNASTHSFGSGNNGSNQNGRKSLFAPYLPQANIPELIEE
GRLVCGILRVNKKNRSDAWVSTDGVLDADVYICGSKDRNRALEGDLVAVELLMVDDVWGS
KKEKEEKKRRKDANNQQDILNSNDDYHNDASSRMANPTNSSSSFGSTEKEDQSSPSKGSV
KRKGSLKQRPTQKKNDDVEVEGQSLLLVEEEEISDSYKPLYAGHVVAVLDRIPGQLFSGT
LGLLRPSQQANNEAHKPQKPKIVWFKPTDKKVPLIAIPTEQAPKDFVENADKYSNKLFVA
SIKRWPITSLHPFGTLVSQLGEINEPETEIDAILRDNNFLSDEYLDPHDRSKERSTFQPT
PLSEENIQSRKIFLNTTAVFETDSLSDLALHTKVLDDGSLEVGCHILDVTAHIEEGSSLD
RRARKRSSGVFIPQKVVHLLPQTLNDALTLKEGKTSATISVVHRFDKSFKVLSTWIGETL
ITPESSITFQEINEQVSSGSLSRFVSQIQDVATALCRKRLSSPSVSLKPELCLLESLDDE
KVKVDLNIFQSSAATSIVTEIERHVNSIVAETIYQKLGDLAFLRRQSKPIATKLASFEKK
VTKLGYEVDITDSQSLLSSILAIEDEATRTGVEILLFKALSRAKYFVAGKVESDQYDHFA
LNLPLYTHFTAPLRRYADHVVHRQLKSVLNDSSYKENDDSLKITSEYCNFKKDCAHHAQE
QAIHLLLCKTINDMGNSTGQILTMATVLQVYESAFDVFIPEFGIEKRVHGDQLPLIKAEY
DGTNRVLELYWQAGVDSATFVPADEKNPKSYRNSIRNKFKSASNEIASIQYQKTLEGENL
LTEELAGQLSNLHIDPPALKMPDPRKDTEPLERFLKTAVTRTEGDKDIQVIRELQQVPIL
LRAEVGMALPCLTVRTLNPFQSRKD
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgagctcttccgataggaaaaacgaagacaggttcgtcgccacgaccgggggcagaaaa
aatcctaaacaaattcacatagcgcaccggcgttctgcaagcgagctgaccaatctcatg
attgagcagttcacactacagagacagttggaaatagttcaggcccaacagcagcagctc
attgctcagcaacagcagctagctcaacaatcgggccagtacctcaaccctgtcggctct
ggaaatgcgtcactcggagctcccgggggacccatcccatctttcgttccgcaacctccc
caccctcattataacgccccatctccttcccctagccagggcaaccggagcagatcacat
tctagaaatagttctggctattacaataacaatgagtttgccccacctggtcaccgcaag
actggctctcaatccagcgtctacggtcactcgagaagacattccttaggattgagcgaa
gccaaaaaagcagctgccgaagaacaagccaaaagagcaagtggcagcggtatctcaatc
aaaattgacgatgcagaaaaaagcgaatccgtggaatcacctctttcaaatgcgatagag
caatcaacctataaattccccgcaaacacaggagatgcgcaaaggggaacaacacctcaa
acctccaggacctcccacatgtcacctcagaaatcttttcaattcccttccgtaccatca
aacaacaaggaaaaccgcgaagaattcagtaatgttagcactcctaaccgtaacgcaaac
gcgaaaggcaaggacgtcagcggtatcaataacaattggcgcttgcagcagcagccaacc
ccgcaaagcaaccaaaatacccccagccaccctttccatcataagaagagccaatctagg
gaagcacctttcggaggccttgagccccctccagtttttcaaccaggtcacagatcccgc
aactctaacgcttctactcacagctttggatctggtaacaatggaagcaaccaaaatggc
cgcaaatctttgtttgcaccatacctgcctcaagctaatatccctgagttaattgaagag
ggtagacttgtttgtggtattttgagagtcaacaaaaaaaatagatctgatgcctgggtt
tctactgatggtgtgttggacgcagatgtgtatatttgtggttccaaagaccgaaacaga
gctcttgaaggtgatttagtagctgttgagctactgatggtagacgatgtgtggggttca
aagaaagagaaagaggaaaagaagaggaggaaggacgccaacaatcagcaagatattttg
aacagcaacgacgattatcacaatgacgcttcttctcgaatggctaatccaaccaactct
tcttcttccttcggttccacggagaaagaggatcaaagttctccttctaaaggaagcgtt
aaaagaaagggctctctaaaacagcgtccaacgcaaaagaagaacgacgatgttgaggtt
gagggacaatctcttttattagttgaggaagaggaaatcagcgacagctacaaacctctc
tatgctggtcatgtggtggccgttttagaccgtatcccaggacagctgttcagcggaact
cttggtttgttgaggccctcacagcaagccaataacgaagcccataagcctcagaagccg
aaaattgtctggttcaaaccaactgataaaaaggttcctttgattgctattccaaccgag
caagctccaaaggactttgtcgaaaacgcagacaagtactcgaataaattatttgttgct
tcaattaaacgctggcctataacctccctgcatcctttcggaactcttgtttcacaattg
ggtgaaatcaacgagcccgagacagagatcgacgctattctcagagacaacaacttccta
tctgacgaatatttggatcctcacgaccgctcaaaggaaagaagcacatttcagccaaca
ccgctctctgaagaaaacattcaatcacgcaaaatattcttaaacactaccgctgtgttt
gaaacagattctctctcagatcttgctttgcacacgaaggtgttggacgatgggtctttg
gaagttggctgccacattcttgacgtcactgcacacattgaagagggttcatcgcttgac
cggagagcgaggaaaagatcttcaggcgtttttattccgcaaaaggtcgttcaccttttg
ccacaaaccctgaatgacgcattgacattgaaagaaggtaaaacttcggcaactatctct
gtggtccatcgttttgataaatcgttcaaggttctctcaacctggattggcgagaccttg
atcacacctgaatcttcaattacgttccaggaaattaatgagcaggtgagctccggctct
ctgtctcgtttcgtctcccaaatccaagatgttgctactgcattgtgccgcaagcgttta
tcatcaccgtctgttagcttgaaaccggagctttgcttattagaaagtcttgacgatgag
aaagtcaaggttgatctaaacattttccagtcaagcgctgcgacatcgatcgtcacagaa
attgagcgccatgtcaatagcattgttgctgagactatttatcaaaaattgggagacctc
gcgttcttgcgtagacagtcaaaacccattgcgactaagctggcatcatttgaaaagaag
gtgacaaagctgggctatgaggttgacattactgattcgcaatccctactttcgtccatc
ttagctatcgaagatgaagctacaaggactggtgtcgaaatccttctcttcaaagcctta
agccgtgctaaatactttgttgctggtaaggttgagtccgaccagtacgatcattttgcg
cttaacttgccgctatacacacacttcactgcgccattgagaagatacgctgaccacgtt
gttcaccgccagctcaaatctgtcttgaatgattcctcttacaaagaaaatgatgattct
ttgaagataacgtcagagtactgcaacttcaaaaaggattgcgctcatcatgctcaggaa
caagctattcatttgcttttgtgcaaaacaataaacgacatgggaaattctacgggtcaa
attctgacaatggcaacagtgttgcaagtgtatgaatctgcgttcgatgtttttattcct
gagtttggaattgaaaagagagttcatggtgaccaattgcccttgattaaagcagagtac
gacggaactaaccgtgttcttgaattgtactggcaggcaggtgtggatagtgccacattt
gtccctgccgatgagaaaaacccaaagtcttacagaaattctattagaaacaagttcaag
tctgcctcaaacgaaattgccagcattcaataccaaaaaaccctagaaggcgagaacctt
ctgaccgaagaactcgcaggtcagttaagcaacttgcatatcgaccccccagctttgaag
atgcccgatccacgtaaggacacggaaccattagagcgctttttgaaaaccgctgttacg
agaaccgaaggcgacaaggatatacaagtgatccgtgaacttcagcaggtgccaattttg
ctcagggcggaagttggaatggcgcttccctgcttgaccgtccgcaccttgaatccattt
caatctagaaaggattaa
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integrated database retrieval system
