Lachancea thermotolerans: KLTH0H02046g
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Entry
KLTH0H02046g CDS
T01117
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03020
RNA polymerase
lth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KLTH0H02046g
09124 Replication and repair
03420 Nucleotide excision repair
KLTH0H02046g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lth03021
]
KLTH0H02046g
03400 DNA repair and recombination proteins [BR:
lth03400
]
KLTH0H02046g
Enzymes [BR:
lth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KLTH0H02046g
Transcription machinery [BR:
lth03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
KLTH0H02046g
DNA repair and recombination proteins [BR:
lth03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
KLTH0H02046g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
8294281
NCBI-ProteinID:
XP_002555968
UniProt:
C5E245
LinkDB
All DBs
Position
H:complement(182788..188010)
Genome browser
AA seq
1740 aa
AA seq
DB search
MVEFPYSSAPLRTVKEVQFGIFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGS
IDRNYKCQTCGEGMNDCPGHFGHIELAKPVFHIGYISKIKKVCECVCMHCGKLLLDEHSE
LMRQAIKIKDPKRRFNAVWSLCKAKMVCETEVPSDNDPAQYVSRGGCGNTQPSVRKDGLS
LVGTWKKDKGADDADQPERRVISADEVLNVFKHISPEDSVRLGFNEDFARPEWMILTVLP
VPPPPVRPSISFNETQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQESEALLQFHV
ATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLD
LDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYIIRDNGDRIDLRYSKR
AGDIQLQYGWKVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTF
IELDQVLNMLYWIPDWDGVIPTPIILKPKPLWSGKQILSIAIPSGIHLQRFDEGTTLLSP
KDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLFSNLQKVVNFWLLHN
GFSIGIGDTIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTAKHGMTLRESFEDSVVR
YLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFA
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQTIDTIASSDAAFERRFRID
LLNPRHALDPSLLESGSEIIGDLKLQALLDEEFKQLVEDREFLRKIFVDGEQNWPLPVNI
RRIIQNAQQTFRIDQTKPTDLTIRDVVYGVKELQEKLLVLRGKSKILQEAQQNAVTLFCC
LLRSRLATRRVIQEYRLNKQTFEWVLSNVESQFLRSIVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDKDHAADQEKAKLIRSAIEH
TTLKSITVASEIYYDPDPRSTVIEEDEEIIQLHFSLMDEETEQSLDYQSPWLLRLELDRA
AMNDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVVRDPKTLDAEAEAEEDHM
LKRIENTMLESITLRGVEDITRVVMMKYDRKVPSPTGEYHKVPEWVLETDGVNLAEVMCV
PGVDPARIYTNSFIDIMNVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTSQG
FLMSVTRHGFNRSDTGALMRCSFEETVEILFEAGAAAELDDCRGVSENVLLGQVAPIGTG
AFDVMIDEESLVKFMPQQKMEEVADGHDGARTPYNNESGLVNADIDVKDELMFSPLVDSG
STDAMSGGFTAYGGADYGGASSPFSGYGDAPTSPGFGGVASPGFSPTSPAYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPGSPSYSPGSPKKENDNDNNNNNNNNN
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggttgaatttccctactccagcgctcccttgcggaccgtcaaggaagtccaatttggt
attttctcgccggaggaagttcgcgctatcagtgtcgcaaaaatcgagtttcctgaaacg
atggacgagactcaaatgagagccaaagtcggaggtcttaatgatcctcgtctgggttct
atagaccgtaactacaagtgtcagacttgtggtgaaggcatgaacgactgcccagggcat
tttggtcacatcgaactagccaaacctgtgttccacatcgggtacatttccaaaattaag
aaagtttgcgagtgtgtctgcatgcattgtggtaaattactcttagatgagcatagcgaa
cttatgagacaggctataaaaattaaagatcctaaaagaagattcaatgctgtttggtct
ctgtgtaaggccaaaatggtatgcgagacagaggtgccctccgataacgaccctgctcag
tatgtttccagaggtggttgcggtaatactcagcctagtgttagaaaagatggactctca
ctagtgggcacatggaaaaaggacaagggtgctgatgatgcagaccagccagaaagacgt
gttatttcagcagacgaggttctcaatgtctttaaacacatttctccagaggattctgtg
aggctgggtttcaatgaagattttgctcgtccggaatggatgatacttacggttttgcct
gttccacccccaccagtacgtccttcaatttctttcaatgaaactcaaagaggtgaggat
gatttgacttacaagctgggtgatatcttaaaggctaatattaatgtccaaaggctggaa
attaacgggtctccgcagcacgtaatacaagaatcggaagctttactgcaatttcatgtt
gccacatacatggacaacgatattgcaggacaacctcaggcactgcagaagtctggtcgt
ccaattaaatctatcagagcccgtttaaagggtaaagaaggtcgtatcagaggtaacctt
atgggaaagcgtgttgacttctctgcccgtacggttatttccggtgaccctaacttagat
ctggatcaagttggtgttccaaagtctatcgcaagaactcttacctacccggaggttgta
acaccttacaatatcgacaggctgacgcagctagtacgcaatggtcctaatgagcatccc
ggtgcaaaatatattattcgtgataacggtgaccgtatcgatttgcggtacagtaaaagg
gcgggtgatatccagctccagtatggttggaaggtcgaacgtcacattatcgatgaagac
ccagtgctgtttaaccgtcagccatcgcttcacaagatgtccatgatggcgcatagagta
aaggttatgccttattctactttcagactgaacttgtccgtaacatcaccttataatgcg
gatttcgacggtgacgagatgaacttacacgtgcctcagtcggaggaaactagagctgag
ctttctcaactttgcgctgttcctcagcaaattgtgtcagcgcagtctaacaaaccttgt
atgggtatcgtacaggacaccttatgtggtgttagaaaaatgacgttaagagacactttt
atcgagctagaccaggtgttgaatatgctctactggattccggattgggatggtgtaatc
ccaaccccaatcatcctgaagccaaaaccattatggtctggtaagcagatactttcgatt
gccattccaagcggtatccacttgcaaaggtttgacgagggcacaactttactatcgcca
aaagacaacggtatgctgattattgatggtcaaatcatcttcggcgttgttgacaagaaa
actgtgggctcttcaagtggtggtttgattcatgttgtcacaagagaaaagggccccaag
atttgtgcaaggctcttcagtaatcttcaaaaggtagtcaatttctggctgcttcacaat
ggattctctatcggtatcggggacacaatcgccgacgagaaatctatgagggaaattact
gaggctattatagttgcaaagagaaaagtcgaggaagtcactaaggaggctcaagcaaac
ttgctgacagctaagcatggtatgactttgagagaatcttttgaagatagcgtcgtcaga
tatttgaacgaggctagagataaagcaggtcgttcagctgaagttaacttgaaggatttg
aataacgtcaagcagatggtaagcgctggttcaaaaggttctttcattaatattgcccag
atgtctgcttgtgttgggcagcagtcggttgaaggtaagcgtattgcctttgggttcgcg
gaccgcaccttgcctcacttctcaaaggacgattattctccagaatctaaaggttttgtt
gagaactcttatctgagaggccttactccccaagaattcttttttcacgccatgggtggt
cgtgaaggtttgatcgatactgccgttaaaacagccgaaacaggttacattcagcgtcgt
ttagtcaaggctttagaagatatcatggttcactacgatggaacaacgagaaactcgctg
ggtaacgtgattcagttcatttatggtgaagatggtatggatgcggctcacatcgaaaag
cagactattgacaccattgcatcttcggacgctgctttcgagcgcagattcaggattgat
ttgctgaaccctagacatgctctcgacccttcgttgctcgaatcgggctctgagattatt
ggtgatcttaagcttcaggctttgctagacgaagagttcaaacagcttgtcgaagatcgc
gaattcctcagaaagattttcgtggacggtgaacaaaactggcctttgcctgtcaacatt
aggcgtattatccaaaacgctcagcagactttcagaatcgatcagaccaagcccacagat
ctgacaatccgtgacgtggtgtatggtgtcaaagaattacaagaaaaacttcttgttctt
cgtggcaagagtaagattctacaagaagcccagcaaaacgcggtcactctattctgctgc
ttactacgttccagactagccactcgcagagtcattcaggaatacaggctaaacaagcaa
actttcgaatgggtcttgagcaatgtcgagtctcaatttttgagatcgatcgtgcaccca
ggtgaaatggtgggtgttttggctgctcagtcaattggtgagccagctactcagatgaca
ctgaacacgttccatttcgctggtgtcgcttctaagaaggttacttctggtgttcctcgt
ttaaaggaaattctgaatgtggctaagaacatgaagactccttctttgacagtttacctg
gacaaagatcacgccgctgaccaggagaaggccaaactgatcagatccgcgatcgagcac
acaactttgaagagtataactgttgcgtctgaaatttactacgaccctgatccacgctct
acagtcatcgaagaggacgaagaaatcatccagttacacttttccttgatggatgaggaa
acagaacagtctcttgactaccaatctccttggttgctacgtctcgaacttgaccgtgcc
gcaatgaacgacaaagatttgactatgggacaagtcggtgaaaagatcaaggagaccttc
aaaaatgatttgtttgtcatttggtcggaagacaacgcagaaaagttgattattcgttgt
cgtgttgttcgtgatcccaagacactggatgcggaagcagaggcagaggaagaccacatg
ctcaaaaggattgagaacacaatgcttgagagcatcaccttgcgtggtgtcgaggatatc
acaagagtcgttatgatgaagtacgatcgcaaggtaccaagccctaccggtgaataccac
aaagttcctgagtgggttttggaaaccgatggtgttaaccttgccgaggttatgtgcgtt
cctggcgtagaccctgcgcgtatatacacaaactcattcattgacattatgaatgttttg
ggtattgaagctggccgcgctgcgttgtacaaggaagtttacaacgtcattgcatccgac
ggttcttacgttaactatcgtcatatggctttgctggttgacgttatgacatcacagggt
ttcctcatgtctgttacccgtcatggtttcaacaggtcggacactggcgcgctgatgagg
tgctcctttgaagaaacagttgaaatcctgtttgaggcaggtgcagcagcagagctggac
gattgccgtggtgtatcagagaacgtgctattgggccaagttgctcctattggtactggt
gcttttgatgtcatgattgatgaagagtcgctagtgaagttcatgccacagcaaaaaatg
gaagaagtcgcggatggccatgatggtgccagaactccttacaacaacgaaagcggccta
gtcaatgcggatatcgatgtcaaggacgaactcatgttttcgcccttggttgactctggt
tctactgacgcgatgtcaggcggtttcactgcctacgggggtgccgactacggtggggct
tcttctcctttcagcggttacggagatgctcccacgtctcctggatttggtggtgtcgcc
tctcctggcttctcacctacatctccagcttactcccctacatctccaagctacagccca
acctccccatcatattcgccaacgtcgccaagctacagtccaacatcaccatcgtactcg
ccaacgtcgccaagctacagtccaacatcaccatcgtactcgccaacgtcgccaagctac
agtccaacatctccatcatactctccaacttctcctagctatagccccacgtcgccatca
tactcgccaacttcgccatcatactcgccaacttcgccaagctacagccctacgtcgcct
tcatactctcccacgtcgccaagctacagtccgacttctccatcttactctccaacatcg
ccaagttatagcccaacctcaccatcatactctcccacatcaccatcatactctccaacc
tctccatcctattccccaacctctccttcttattctccaacttcaccaagctactctcct
acgtctccatcgtactctccaacttctccaagctatagtccgggctctccctcatactct
ccaggctccccaaagaaagagaacgacaacgacaacaacaacaacaacaacaacaacaac
tga
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integrated database retrieval system
