KEGG   Lachancea thermotolerans: KLTH0H08008g
Entry
KLTH0H08008g      CDS       T01117                                 
Name
(RefSeq) Sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
lth  Lachancea thermotolerans
Pathway
lth03018  RNA degradation
lth03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lth00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    KLTH0H08008g
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KLTH0H08008g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lth03019]
    KLTH0H08008g
   03041 Spliceosome [BR:lth03041]
    KLTH0H08008g
Messenger RNA biogenesis [BR:lth03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     KLTH0H08008g
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     KLTH0H08008g
Spliceosome [BR:lth03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    KLTH0H08008g
 Complex C
  U2 snRNP components
    KLTH0H08008g
SSDB
Motif
Pfam: LSM Hfq Gemin7
Other DBs
NCBI-GeneID: 8294546
NCBI-ProteinID: XP_002556228
UniProt: C5E2V5
LinkDB
Position
H:join(703423..703476,703553..703786)
AA seq 95 aa
MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCSNESKYPHLSSVRNI
FIRGSTVRYVYLNKNMVDTNLLQDAARREAMSARK
NT seq 288 nt   +upstreamnt  +downstreamnt
atgctgttcttctcctttttcaagactctggtggaccaggaggtcactgtggagctaaag
aatgacatagagctgaaaggaaccctgaagtcggtagatcagttcctcaacctcaagctt
gacaatatatcgtgctcgaacgagagcaagtacccccacctgtcgtcggtaagaaacatt
ttcatcagagggtcgacagtaaggtacgtgtatctcaacaagaacatggtcgacaccaac
ctgctgcaggacgccgctagaagggaggcgatgagcgccagaaagtaa

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