Lachancea thermotolerans: KLTH0H15686g
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Entry
KLTH0H15686g CDS
T01117
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03013
Nucleocytoplasmic transport
lth03015
mRNA surveillance pathway
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0H15686g
09122 Translation
03013 Nucleocytoplasmic transport
KLTH0H15686g
03015 mRNA surveillance pathway
KLTH0H15686g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0H15686g
03041 Spliceosome [BR:
lth03041
]
KLTH0H15686g
Enzymes [BR:
lth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KLTH0H15686g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
KLTH0H15686g
Spliceosome [BR:
lth03041
]
Complex C
Other components
EJC/TREX
KLTH0H15686g
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
KLTH0H15686g
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8294902
NCBI-ProteinID:
XP_002556536
UniProt:
C5E3R3
LinkDB
All DBs
Position
H:complement(join(1353647..1354725,1354841..1355081))
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AA seq
439 aa
AA seq
DB search
MSHEGEEDLLEYSDNEQEIQVEASKAAEAGADTKDSGETTGEADKKGSYVGIHSTGFKDF
LLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPV
PGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETAPHI
VVATPGRLKALVRDKIIDLSSVKNFVIDECDKVLEELGMRKDVQDIFRATPRDKQVMMFS
ATLSQEMRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFN
QVIIFVKSTNRANELTKLLNASNFPAITVHGGMKQEERIARYKAFKEFEKRICVSTDVFG
RGIDIERINLAINYDLPSEADQYLHRVGRAGRFGTKGLAISFVATSEDEEILAKIQDRFD
VKVAEFPEEGVDPSTYLNT
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacgaaggtgaagaggatttactagaatactccgacaacgagcaggagatccag
gtggaggcttccaaggccgctgaggccggcgctgacaccaaggactccggagagactaca
ggggaggccgacaaaaagggctcctacgtgggcattcactctaccgggttcaaggacttt
ctgctaaagccagagctttcgagagccattatcgactgtggtttcgagcacccctccgaa
gttcaacaacacacaattcctcaatctattcacggaacagacgtgctttgccaggccaaa
tctggtctcggtaagactgccgtctttgtgctgtcaaccttgcaacaactggacccagtg
cccggcgaggtttccgtcgttgtcatctgtaacgcaagagaactggcctaccaaatccgt
aacgagtacctgagattctcgaagtacatgccagatgttaaaactgctgttttctacggt
ggtaccccaatcacaaaggatgctgaacttctaaagaacaaggaaactgcccctcacatt
gtggttgccactccaggtcgtttgaaggctctcgtcagggacaagattattgacctgtca
tcagtcaagaactttgttattgacgagtgtgacaaggttttggaagagctgggcatgcgt
aaggacgtacaggacattttcagagctacccctagagacaagcaggttatgatgttttcc
gctaccctatcccaggaaatgagaccaatctgcaggcgtttcctacagaaccctcttgag
attttcgtggatgacgaagccaagttgaccctgcacggcctgcagcagtactacatcaaa
ctggaagagcgcgagaagaaccgtaaacttgcacaacttctggacgacctagagttcaac
caagttatcattttcgtgaagtctacaaacagagctaatgaactgacgaaactgttgaac
gcttccaacttccctgctatcactgtgcatggtggtatgaagcaagaagagcgtattgct
cgctacaaggcctttaaggagttcgagaagcgtatttgtgtttcgactgatgtttttggt
agaggtattgatatcgagcgtatcaacttggccatcaattacgacttgccaagcgaggct
gaccagtacttacaccgtgttggtagagccggtagatttggtaccaagggtttggccatc
tcgtttgttgccaccagcgaagatgaagagattctagctaaaatccaagacagatttgac
gtcaaggttgcagaattccctgaagaaggtgtcgacccatcgacctatctaaacacttaa
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