Lactococcus taiwanensis: JW886_02685
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Entry
JW886_02685 CDS
T07214
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lti
Lactococcus taiwanensis
Pathway
lti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JW886_02685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lti03019
]
JW886_02685
03009 Ribosome biogenesis [BR:
lti03009
]
JW886_02685
Enzymes [BR:
lti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JW886_02685
Messenger RNA biogenesis [BR:
lti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JW886_02685
Ribosome biogenesis [BR:
lti03009
]
Prokaryotic type
rRNA helicases
JW886_02685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QSE77186
UniProt:
A0AA45QS86
LinkDB
All DBs
Position
534378..536021
Genome browser
AA seq
547 aa
AA seq
DB search
MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI
EKIDASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKAGA
HIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPENRQTLLF
SATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYYVKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAA
RGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTNK
PMKGLKPPTKEEAYEASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEKFDAKELVAL
LLQGRVKDPDNQEEVKITAERPLPFNGEGKGFKKKGKGGGGRYKGRGNGDRDGNRGGYRG
NRDGKDGERGGDRKRNWKDRDDNRGGYRGKRDDRRFDDRKQGEKTPRKRTTGTEKSAGFV
MRSRGDK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaactcggcctgtcagaaggaatcgtaaatacacttacagagattggt
tatgagcaaccaacaccaatccaagaacaaacaataaaacttgcacttgaagggcgtgac
gttctaggtcaagcgcaaacaggaactggtaaaacagcggcatttggtcttccaacaatt
gaaaaaattgatgcttctaatccagcgattcaagcacttgttattgcgccaacccgtgaa
cttgcggttcaaggacaagaagaacttttccgttttggtaaatcaaaaggacttaaagtt
cgtactgtctttggtggttcaagtattgaaaaacaaattaaaggccttaaagctggtgca
catattgttgtgggaacaccaggacgtttggttgacttgattaaacgtaaagcaattaaa
ttggatcaacttgaaactttaattcttgatgaagcagatgaaatgttgaacatgggattt
ttggaagacatccatttcatcattgaaaaaacaccagaaaatcgtcaaacattgctcttt
tctgcaacaatgcctgccgacatcaaaaaaattggtgtgaaattcatgaaaaatcctgaa
cacatcaaaattgcagccaaagaaatgacggctgaccgtattgatcaatattatgtgaaa
acaaaagaatttgaaaaatttgatgttttgactcgtttgcttgatgtggaacgtccagaa
cttgcaattgttttcggtcgtacaaaacgccgtgttgacgaattgattcgtgggcttaaa
ttgcgcggttaccgtgctgaaggaatgcacggtgatttagaccaaaataaacgtttggcc
gtattgcgtgatttcaaagcaggacacattgacgttttggtggcaactgacgttgccgct
cgtggactcgacgtgtcaggagtgactcacgtttataactacgacattactcaagaccaa
gaaagctatgttcaccggattggtcgtaccggtcgtgctggtaaatcaggacgttcagta
acatttgtttcatacaacgaaatgggttaccttcgtgccattgaaaagttgacaaacaaa
ccaatgaaaggcttgaaaccacctacaaaagaagaagcttatgaagcttcactctcagta
gctatggatgatgtgcttcgtgatttgtctgatgactcagctaaagcaaaattggctaaa
tttgacaaacaagcagcgagcctacttgaaaaatttgatgctaaagaattggttgcttta
cttcttcaaggtcgcgtaaaagaccctgataatcaagaagaagttaagattacagctgaa
cgtccattgccatttaatggtgaaggaaaaggcttcaagaaaaaaggtaaaggtggcggc
ggacgctataaaggtcgtggaaatggtgaccgtgatggaaaccgtggcggctaccgtggc
aatcgtgatggtaaagatggcgaacgcggtggagatcgtaaacgcaactggaaagaccgt
gatgataaccgtggcggttaccgtggaaaacgtgatgaccgtcgttttgacgatcgtaaa
caaggagaaaaaactcctcgtaaacgtaccactggtacagaaaaatcagctggcttcgta
atgcgtagccgtggcgataaataa
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