Lactococcus taiwanensis: JW886_08450
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Entry
JW886_08450 CDS
T07214
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lti
Lactococcus taiwanensis
Pathway
lti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JW886_08450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lti03021
]
JW886_08450 (rpoC)
03400 DNA repair and recombination proteins [BR:
lti03400
]
JW886_08450 (rpoC)
Enzymes [BR:
lti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JW886_08450 (rpoC)
Transcription machinery [BR:
lti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JW886_08450 (rpoC)
DNA repair and recombination proteins [BR:
lti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JW886_08450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6076
Motif
Other DBs
NCBI-ProteinID:
QSE77670
UniProt:
A0AA45QSB1
LinkDB
All DBs
Position
complement(1706120..1709743)
Genome browser
AA seq
1207 aa
AA seq
DB search
MVDVNKFESMRIGIASPQKIRYWSFGEVKKPETINYRTQKPEREGLFDERIFGPQKDWEC
ACGKLKGVFYKNQVCELCGVQVTTAKARRERMGHIELAAPTSHIWYFKGIPSRMGLALDM
SPRALEEVIYFASYVVIDPKETDLEKKQLLTEREYREQLLKNGFGSFVAKMGAEAIQDLL
NDVDIDKEVSELKEELKAVTGQRRVKIIRRLDVLTAFKKSGNSLSWMVLNVLPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPNIIVQNEKRMLQEAVDTLIDNG
RRGRPITGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMSELVKRELAANIRAAKRKVERQDSDVWDVLEEVVKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKAMRLHPLACEAYNADFDGDQMAIHLPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEEKGREGEGMIFSTPEEVEIAMRNGYVHLHTRIGI
ATKSINKPWTPEHQDKILITTVGKVIFNSIIPEGMPYLNEPTDINLTGKTDDRFFMEPGQ
DIQEVLANLDTVRPFKKGYLGNIIAEVFKRYRTTATSEYLDRLKDLGYHQSTLAGLTVGI
ADIPVVEDKHEIIDAAHKRVEQITKQFRRGLITDDERYNAVTGVWRDAKESLEKRLIEEQ
DLTNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGKIMELPIISNFREGLSVLEMFFST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLVISDIATGKEMVEPLF
ERLVGRYTRKSVFHPETGEMIIADDTLISEDVARQIVDAGVKEVTIRSVFTCKTPHGVCK
HCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASSSDITQGLPRVQEI
FEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGQTDTRSYTVGMADVLMVEEGEFI
HRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGDKHIEVMVRQMLRKV
RIMDNGSVDILPGTLMDISDFEKANEEALLKGEMPATGRPVLMGITKASLETNSFLSAAS
FQETTRVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMFRYRNIEPLADLSNAPEVKEV
ETETVES
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgatgtaaataaatttgagagcatgcgaattggtatcgcatctccacaaaaaatt
cgttactggtcatttggcgaagttaaaaaaccagaaacaatcaactatcgtacacaaaag
cctgaacgtgaaggactctttgatgaacgtatcttcggtcctcaaaaagactgggaatgt
gcctgtggaaaactcaaaggtgttttctacaagaatcaagtctgtgaactttgtggagtt
caagtaacaactgcaaaagcgcgtcgcgaacgcatggggcacattgaattggctgcgcca
acttcacatatctggtatttcaaaggtattccgtcacggatgggacttgcgcttgatatg
agcccacgtgcgcttgaagaagtgatttactttgcaagttatgtggtcattgatcctaaa
gaaacagatcttgagaaaaaacaactcttaacagaacgtgaatatcgtgaacaactcttg
aaaaatggttttggttcattcgttgcaaagatgggtgcagaagcgattcaagatttgttg
aacgatgtagatattgataaagaagtatcagaacttaaggaagagttaaaagcagtcact
ggacaacgtcgtgttaaaatcattcgccgtttagatgttttgacagccttcaaaaagtca
gggaattccctttcttggatggtcttgaacgtattgccagtcattccaccagatttacgt
ccgatggtacagttggatggtggacgttttgccacatctgacttgaatgatttgtatcgt
cgtgttattaaccgtaacaatcgtttgaaacgattgatggagcttaacgcaccaaacatt
attgtgcaaaatgaaaaacggatgctgcaagaagccgtggatactttgattgacaacggt
cgtcgtggtcgtccaatcactggtgccggtaaccgtccattgaagtctctttcacatatg
ttgaaagggaaacaaggacgtttccgtcaaaacttgcttggtaaacgggttgactattct
ggacgttcggttatcgctgttggtcctactttgaagatgtaccaatgcggtgtaccacgt
gaaatggcgattgaattgttcaaaccattcgtcatgtctgaactcgtgaaacgtgagttg
gctgcgaacattcgtgcggctaaacgtaaagtggaacgtcaagattcagatgtctgggat
gtacttgaagaagttgttaaagaacaccctgttcttcttaaccgcgcacctacgcttcac
cgcttgggtattcaagcgtttgagccagtcttgattgatggtaaagcgatgcgtcttcac
ccacttgcttgtgaagcctacaacgccgactttgacggtgaccaaatggcgattcacttg
ccattgtctgaagaagctcaagctgaagcacgtcttttgatgcttgctgctgaacatatc
ttgaaccctaaagatggtaaaccagtcgttacaccatctcaagatatggtccttggtaac
tactaccttacgatggaagaaaaaggtcgtgagggtgaaggaatgattttctcaactcct
gaagaagttgagattgcaatgcgcaatggttatgtacatttacatacacgtattggtatt
gctactaaatctatcaacaaaccttggacgcctgaacatcaagataaaatcttgattaca
acagttggtaaagtgatctttaattcaatcattccagaaggaatgccttaccttaatgaa
cctactgacatcaacttgacaggtaaaacagatgaccggttctttatggaaccaggacaa
gatatccaagaagtcttggctaatcttgatactgtgcgtccattcaaaaaaggctatctt
ggaaatatcatcgctgaagtcttcaaacgttaccgtacgacagcaacgtctgagtacctt
gaccgcttgaaagaccttggctaccaccaatctactttggctggtttgactgtgggtatc
gctgatatccctgttgttgaagataaacatgaaatcatcgatgctgcacacaaacgtgtg
gaacaaatcacgaaacaattccgccgtggtttgattactgatgatgaacgttataacgca
gtgaccggtgtttggcgtgatgctaaagaatcacttgaaaaacgtctgattgaagaacaa
gatttgactaacccaatcgttatgatgatggactctggagcccgtggtaacatctctaac
ttctctcaacttgctggtatgcgtggtttgatggctgctcctaatggtaaaattatggaa
ttgcctatcatctccaacttccgtgaagggctttctgtcttggaaatgttcttctcaact
cacggtgctcgtaaagggatgaccgatacggcccttaagacagccgactctggttatctt
actcgtcgtttggttgacgttgcccaagatgttatcattcgtgaagacgactgtggaact
gaccgtggacttgtgatttcagacatcgctactggtaaagaaatggttgaacctttgttt
gaacgcttggttggtcgttatacccgtaaatcagtcttccatccagaaactggtgaaatg
attatcgctgatgataccttgatttccgaagatgtagcgcgccaaatcgttgatgctggc
gtcaaagaagtaaccatccgctcagtatttacatgtaaaacgccacatggtgtatgtaaa
cactgttacggtatcaacttggcaacaggtgatgcggttgaagttggtgaagctgttggt
accatcgctgctcaatcaatcggtgaacctggtactcagttgacaatgcgtacattccac
acgggtggtgttgcgtcaagttcagatatcactcaaggtttgcctcgtgttcaagaaatc
tttgaagcacgtaaccctaaaggggaagcaatcatcactgaagtaactggtacagttgaa
tcaattgttgaagatcctgctactcgtactcgcgaaattactgttaaaggacaaacggat
acacgtagttatactgttggtatggctgatgtcctgatggttgaagaaggtgaattcatt
caccgtggtgcacctttgattcaaggttctatcgaacctaaacacttgcttcaagttcgt
gatgctttatcagttgaaacttacttgctcggtgaagttcaaaaaacttaccgttcacaa
ggggttgaaatcggagataagcacatcgaagtgatggttcgtcaaatgcttcgtaaagtt
cgtatcatggataatggttcagttgatatcttgccaggtactttgatggatatttcagat
ttcgaaaaagcaaatgaagaagcactcttgaaaggtgaaatgcctgcaacaggacgtcca
gtcttgatggggattactaaagcctctcttgaaaccaattcattcttgtcagctgcatca
ttccaagaaacaactcgtgtccttactgatgccgcaattcgtggtaaagaagatcacttg
cttggtttgaaggaaaatgttatcatcggtaagattattcctgctggtaccggtatgttc
cgttaccgtaacattgaacctttggctgatttatcaaatgcacctgaagttaaagaggtt
gaaacagaaactgtggaaagctaa
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