Leucobacter tenebrionis: KVY00_04350
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Entry
KVY00_04350 CDS
T09454
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ltn
Leucobacter tenebrionis
Pathway
ltn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ltn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KVY00_04350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ltn03400
]
KVY00_04350 (mfd)
Enzymes [BR:
ltn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KVY00_04350 (mfd)
DNA repair and recombination proteins [BR:
ltn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KVY00_04350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QZY52689
LinkDB
All DBs
Position
complement(922368..926162)
Genome browser
AA seq
1264 aa
AA seq
DB search
MTLRGIDRLLEASPSFARALETADGSVATDAEFSVAEGLRAPLIAGLLRRRLEAGDRGAL
LVIAATSREADALRSALGSLVPEAVTAEFPAWETLPHERLSPSAETVGRRVAALRLLREH
ADDAHGFRPLIMVASVRAALQPVSPHAAQAEPLVLRAGEDPSRSPGLQGVRAASAPGGAL
DLVARELVLRAYTRVDMVTRRGEFAVRGGILDVFPPTAEQALRVDFFGDEVDQIRRFAVS
DQRSAGDPIPELELWPARELLLTDEVRERAAELLPRFPALSSLLEKMSQGIPVEGMESLL
PQLVPGLAPLTALLPEGGAVVVASPERVAGRAVSLAETNREFLEAAWSAATAGADTPVPT
DDSGMLSVSELRAASRGRPWWTVSTFVADESEPAEQAGPGAAAEPSGTRAAGEPSVTLRE
RSESQDPAAHVADALAINVAGNPFPRPASGADATGSAIRLFSERLREGWRVVVTAQGVGL
VERARDLLVEAGAAARMVDELPERLEDGVVYLVAGTAWSGFASEEAKLLLASEAEFFGRS
VSSQAASGQKLARRRGKNVVDPLKLVAGDYVVHETHGIGRFVELTQRMVPTGVGRDATKA
LREYLVLEYASTKRGMPKDKLYVPTDQLDQLSRYVGGEAPPLSKMGGSDWANAKKKARKA
VRDIAVELVKLYSARVASKGHAFSPDTPWQHELEEAFPYAETLDQLTTIDEVKRDMERSI
PMDRLLAGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTLLVNQHLETFQNRFAGFPVQL
RALSRFQSDKEAKDTIDGLAAGTVDVVIGTHRLLSESVHYKDLGLVIIDEEQRFGVEHKD
ALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGARSDKQITA
AIRRELLREGQVFFVHNRVSSISRVAAQIAELVPEARVAVAHGKLSEHQLEQVVQDFWER
KFDVLVSTTIVETGLDIANANTIIIDNADKYGLSQLHQLRGRVGRSRERAYAYFLYDPDK
PLSETAHERLETLATNNELGSGMQVALKDLELRGAGNLLGGEQSGHIAGVGFDLYLRMIG
EAVNTFKGEESTGPVELVLELPVDAHIPEEYVESERLRLEAYQKFSAASHPQAPEDHVSL
VLEELTDRYGEPPAEVQRLAAVSALRRRAAKLGLSKVVAAGPALRIEPVKLLDSRRMRMN
RMYPGARYTEATSTLQIPLPGGTASSRSPLSGVGQRNVGDEGDIVAWTGRVLATLLEEEA
AAEG
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgacactgcgcgggatcgaccgcctgctcgaggcatctccgtcattcgcgcgagcgctc
gagacggccgacggatcggtggcgaccgacgccgagttctcggtcgccgaggggctgcgg
gctccgctcatcgcggggctgctgcggaggcgcctcgaggcgggggaccgcggggcactg
ctcgtgatcgcggcgacgagccgcgaggcggatgcgctgcgttcggcactcggctcgctc
gtccccgaggcggtcacagcggagttcccggcttgggagacgctgccgcacgagcgactg
agtccgagcgcggagaccgtcgggcgccgtgtggccgcgctgcgactgctgcgggagcac
gcggacgacgcgcacggtttccgtccgctcatcatggtcgcctccgtgcgggctgcccta
cagccggtctctccgcacgccgcgcaagccgagccgctggtgctgcgcgcaggggaggat
ccctcacgatccccggggctgcagggggtccgcgctgcctccgctcccgggggagcgctc
gacctggtcgcccgcgagctggtgctgcgcgcctacacccgcgtcgacatggtcacgcga
cgcggcgagttcgcggtgcgcggtggcattctcgacgtcttcccgcccacggccgagcag
gcgctgcgcgtcgacttcttcggtgacgaggtcgaccagatccgccgcttcgcggtctcg
gaccagcgcagcgccggcgacccgatccccgaactcgagctctggccggcgcgcgagctc
ctgctcaccgacgaggtgcgcgagcgcgcggccgagctgctgccgcgcttccccgcgctt
tcctcgctgctcgagaagatgagccagggcatccccgtcgagggcatggagagcctgctg
ccgcagctcgtaccgggcctcgccccgctcaccgcactgctgcccgagggcggtgcggtg
gtcgtcgcatcccccgagcgcgtggcaggccgagcggtcagcctcgccgagaccaaccgc
gagtttctcgaggcagcctggagcgccgcgaccgcgggtgcggacaccccggtgcccacc
gatgacagcggtatgctctcggtctccgagctgcgcgcggcgtcgcgcggtcggccgtgg
tggacggtctcgacgttcgtggccgatgagtcggagccggcggagcaggctggtcccggg
gcggccgcggagccctccggcacccgcgccgccggggagccctccgtcaccctgcgcgag
cgcagcgagtcgcaggaccccgcggcccatgtcgccgacgcgctcgcgatcaacgtcgcg
ggaaacccgttcccccgccccgcgagcggtgccgatgcgaccggctccgcgatccgcctc
ttctccgaacgcctgcgcgagggatggcgagtcgtcgtcaccgcgcagggcgtcgggctc
gtcgagcgcgcgagggatctgctggtcgaggcgggggccgccgcccgcatggtcgacgag
ctgcccgagcggctcgaggacggcgtggtgtacctcgtcgcgggcaccgcctggtcgggg
ttcgcgagcgaggaggcgaagctcctgctggcgagcgaggcggagttcttcggccgctcg
gtgagctcgcaggcagcgagcgggcagaagctcgcacgccgccgcggcaagaacgtggtg
gacccgctcaagctcgtcgcaggcgactacgtggtgcacgagacgcacggcatcggccgg
ttcgtcgaactgacgcagcgcatggtgccgaccggtgtcggacgcgacgccaccaaggcg
ctgcgcgagtacctcgtgctcgagtacgcgtcgaccaagcgcggcatgcccaaggacaag
ctctacgtgcccaccgatcagctcgatcagctgtcgcgctacgtgggcggcgaggcgccg
ccgctctcgaagatgggcggcagcgattgggccaatgcgaagaagaaggcgcgcaaggcg
gtgcgcgacatcgcggtcgagttggtcaagctctactcggcgcgcgtggcgtcgaagggg
cacgccttctcgcccgacacgccgtggcagcacgagctggaggaggcgttcccctacgcc
gagaccctcgaccagctcaccaccatcgacgaggtcaagcgcgacatggagcgctcgatc
cccatggatcgtctcctcgcgggcgacgtcggcttcggcaagaccgaggtcgcggtgagg
gcggcgttcaaggcggtgcaggacggcaagcaggtcgccatgctcgtgcccaccactctg
ctcgtgaaccagcacctcgagaccttccagaaccgcttcgccgggttcccggtgcagttg
cgagcgctcagccggttccagagcgacaaggaggcgaaggacacgatcgacggactcgcg
gcgggcacggtcgacgtcgtcatcggcacgcaccgcctgctctcggagagtgtgcactac
aaggatctcggcctcgtcatcatcgatgaggagcagcgcttcggagtcgagcacaaggat
gcgctgaagaagctcaagaccaacgtcgacatcctcgcgatgagcgcgacgccgatcccg
cgcacgctcgagatggccgtcaccggcattcgcgagatgtcgaccctggccacgccgccc
gaggaccgccatccgatcctcaccttcgtcggcgcgcgcagcgacaagcagatcaccgcg
gcgatccgtcgcgagctgctgcgcgaggggcaggtgttcttcgtgcacaatcgggtgtcc
tcgatcagtcgagtggccgcgcagatcgccgagctggtgcccgaagcgcgcgtcgccgtg
gcgcacggcaagctcagcgagcaccagctcgagcaagtggtacaggatttctgggagcgc
aagttcgacgtgctcgtctcgaccaccatcgtcgagaccggcctcgacatcgcgaacgcc
aacacgatcatcatcgacaacgccgacaagtacgggctgagccagctgcaccagctgcgg
ggccgggtcggccgcagccgcgagcgcgcgtacgcgtacttcctctacgatcccgacaag
ccgctcagcgagaccgcgcacgaacggctcgagacgctcgccaccaataacgagctggga
tcgggcatgcaggtggcgctcaaggacctcgaactgcgcggtgccggcaacctgctgggc
ggggagcagtccgggcacatcgcgggtgtcggcttcgacctctacctgcggatgatcggc
gaggccgtgaatacgttcaagggcgaggaatcgaccggcccggtcgaactggtgctcgag
ctgcccgtcgacgcgcacatccccgaagagtacgtggagagcgagcggctgcgcctcgag
gcgtaccagaagttctcggcggcgtcgcacccgcaggcgcccgaggaccacgtgtcgctc
gtgctcgaggagctcaccgaccgctacggtgagcctcccgccgaggtgcagcgcctcgca
gcggtctcggcgctgcgccgccgcgccgcgaaactcggcctgtcgaaggtcgtggccgcc
gggcccgcgctgcgcatcgagccggtcaagctgctcgactcccgtcgaatgcgcatgaac
cgcatgtaccccggggcgcggtacacggaggcgacgagcacgctccagatccccctgccc
ggtggcacggcctcctcgcgcagcccgctctcgggcgtgggccagcgcaacgtcggcgac
gagggtgacatcgtcgcctggacgggccgcgtgctcgcgacgctgctcgaggaggaggcg
gctgcggagggctga
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integrated database retrieval system
