Limnobacter thiooxidans: RGQ30_03000
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Entry
RGQ30_03000 CDS
T09704
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto00521
Streptomycin biosynthesis
lto00523
Polyketide sugar unit biosynthesis
lto00525
Acarbose and validamycin biosynthesis
lto00541
Biosynthesis of various nucleotide sugars
lto01055
Biosynthesis of vancomycin group antibiotics
lto01100
Metabolic pathways
lto01110
Biosynthesis of secondary metabolites
lto01250
Biosynthesis of nucleotide sugars
Module
lto_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
RGQ30_03000 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
RGQ30_03000 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
RGQ30_03000 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
RGQ30_03000 (rfbB)
00525 Acarbose and validamycin biosynthesis
RGQ30_03000 (rfbB)
Enzymes [BR:
lto01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
RGQ30_03000 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
adh_short
Motif
Other DBs
NCBI-ProteinID:
BET24799
UniProt:
A0AA86IXD5
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All DBs
Position
336452..337480
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AA seq
342 aa
AA seq
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MTLLVTGSAGFIGSCFVRQHFEHSDEPVVSLDALTYAGHLSTLGNVLQNPNHTFVHASIG
DVDQVRAILETHTPRAILNFAAESHVDRSILGPSAFIETNVVGTYRLLECAREFWNKLQG
TEKAGFRFLHVSTDEVYGTLAAGDAPFSETNRYEPNSPYSASKAASDHLVRAWHHTYGMP
VLTTNCSNNYGPYHFPEKLIPLCIMNALAGKPLPVYGDGQQIRDWLFVEDHTRGIRSVLE
NGAIGETYNIGGWNEKANLDVVNLICKLLDELRPRADGVSYATQIAFVTDRPGHDRRYAI
DARKIERELGWKPAETFETGIRKTVQWYLANQAWVAEVTAGR
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgactttattggttaccgggtcagcgggttttattggttcgtgctttgtacggcagcac
tttgaacacagcgatgaacccgttgtcagcctggatgcgctgacctacgccggccatttg
agtacgctgggcaacgttctgcaaaacccgaatcacacattcgtgcatgcctcaatcggc
gacgtggatcaggttcgagcaattctggagacgcacaccccccgggcaattttgaatttc
gccgcagaaagccatgtagaccgttcaattcttggaccgagtgcattcattgaaaccaat
gtggtcggtacctatcgcttgctggaatgtgctcgcgaattctggaacaagctgcaaggg
accgagaaagctggttttcgttttttgcatgtcagcacggacgaagtttacggcacgctg
gcggcgggggatgctcctttttcagaaaccaaccggtacgagcccaacagcccctattca
gccagcaaagcagcaagtgatcacctggttcgagcgtggcaccacacctacggaatgcct
gtactgacgaccaattgcagcaacaattacggcccttaccactttccggaaaagctgatt
cccttgtgcatcatgaatgcgctggcgggaaagcctttgcctgtttatggcgatggccag
caaattcgtgactggttgttcgtcgaggatcacacccgcggaatccgcagcgtccttgaa
aatggcgccatcggtgaaacctacaacattggtggctggaatgagaaagccaatcttgac
gtggtaaacctgatttgcaagttgctggacgagttgcgcccgcgcgcggatggtgtgtcg
tacgccacccagattgcctttgtcaccgaccgccccgggcacgacagacgctatgcaatt
gacgcgcgaaaaattgagcgtgaattaggctggaagccagcagaaacattcgagaccggt
attcggaaaaccgtgcagtggtatttggccaatcaggcatgggtggctgaggtgacagca
gggcgttga
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