Limnobacter thiooxidans: RGQ30_03250
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Entry
RGQ30_03250 CDS
T09704
Name
(GenBank) hypothetical protein
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGQ30_03250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_03250
Enzymes [BR:
lto01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
RGQ30_03250
DNA repair and recombination proteins [BR:
lto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RGQ30_03250
Prokaryotic type
RGQ30_03250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
NUDIX_4
HHH
EndIII_4Fe-2S
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BET24824
UniProt:
A0AA86M7Z1
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All DBs
Position
360150..361268
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AA seq
372 aa
AA seq
DB search
MKGEQFAAVLVNWQTRHGRQTLPWQHTGDAYKVWLSEIMLQQTQVTTVLTYYEKLLNACP
KVSDLAAASQQDVMQLWAGLGYYTRARNLHACAQQVVERFGGVFPRDVADLESLPGIGRS
TAGAIASLAYGVQAPILDGNVKRVFCRYYGVEGYPEQSAVKKQLWLIAETNVPRANPGQY
NQALMDLGATRCTPRNPDCRQCPLNESCVALSKGQVNQLPTPKPKKERPELYFISLLVQD
ETRALLLDIQPDKGVWQGLWTPPCVPCDEEHQPAALLPEFDQILSRWGLSDAREEIEEQL
QRLQGQSWLVHELTHRKMHFKVLALKRSGFHAAFHQLSEKPVPRIVHKLLEQAGRLNESP
QSSMAQQDTLDF
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtgagcagtttgcagcagtgttggtgaactggcaaacccggcatggccgccaa
acccttccctggcaacacaccggtgatgcctacaaggtttggctgagcgagatcatgctg
cagcaaacacaggtgacgactgtactgacctactacgaaaaattgctgaatgcttgcccc
aaggtgagtgatttggccgccgcttcgcagcaggacgtgatgcagttgtgggcagggctg
ggttattacacgcgtgcgcgcaacttgcatgcgtgtgcccagcaagtggttgagcgtttt
ggtggcgtttttccgcgtgatgtggctgatctggaaagtctgcccggtattggtcgatcc
acggcgggtgccattgcgtcgctggcgtatggcgtgcaggccccaattctggatggcaat
gtcaaacgggtgttctgccgctattacggggtggaggggtatcccgagcaaagtgcagtt
aaaaagcagttgtggttgattgcagaaaccaatgtgccccgagccaaccctggccaatac
aaccaggctttgatggacttgggtgccacgcgttgtacaccgcgcaaccccgattgtcgg
cagtgccccttgaacgaaagctgtgtggcattgagcaaagggcaggttaaccagttgccg
acgccgaaaccgaaaaaagaacggccagagttgtatttcatcagcctgcttgttcaggat
gaaacgagggctttgctgctggacattcaacctgacaaaggcgtgtggcaagggttgtgg
actccaccctgcgtgccgtgtgacgaggaacatcaacccgccgccttgttgcccgagttt
gatcagatcttgagccgttggggcttaagcgatgcccgggaggagattgaggaacagttg
caacgtctgcaaggtcagtcttggctggtgcatgagttaacccataggaaaatgcatttc
aaggtgctggctttgaaacgatctggtttccatgcggcgtttcatcaactttctgaaaaa
ccagttcccagaattgtgcacaagttgctggaacaggctgggcgtttgaatgaatcaccc
caaagttcgatggcgcaacaggatactctcgatttctga
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