Limnobacter thiooxidans: RGQ30_03970
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Entry
RGQ30_03970 CDS
T09704
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto00071
Fatty acid degradation
lto00280
Valine, leucine and isoleucine degradation
lto00310
Lysine degradation
lto00362
Benzoate degradation
lto00380
Tryptophan metabolism
lto00410
beta-Alanine metabolism
lto00640
Propanoate metabolism
lto00650
Butanoate metabolism
lto00907
Pinene, camphor and geraniol degradation
lto00930
Caprolactam degradation
lto01100
Metabolic pathways
lto01110
Biosynthesis of secondary metabolites
lto01120
Microbial metabolism in diverse environments
lto01200
Carbon metabolism
lto01212
Fatty acid metabolism
Module
lto_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RGQ30_03970
00650 Butanoate metabolism
RGQ30_03970
09103 Lipid metabolism
00071 Fatty acid degradation
RGQ30_03970
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RGQ30_03970
00310 Lysine degradation
RGQ30_03970
00380 Tryptophan metabolism
RGQ30_03970
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RGQ30_03970
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RGQ30_03970
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RGQ30_03970
00930 Caprolactam degradation
RGQ30_03970
Enzymes [BR:
lto01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RGQ30_03970
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RGQ30_03970
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RGQ30_03970
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
ECH_2
3HCDH
DAO
UDPG_MGDP_dh_N
NAD_binding_2
2-Hacid_dh_C
Sacchrp_dh_NADP
F420_oxidored
Pyr_redox_2
NAD_Gly3P_dh_N
NAD_binding_8
ApbA
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
BET24896
UniProt:
A0AA86MCI4
LinkDB
All DBs
Position
427568..429712
Genome browser
AA seq
714 aa
AA seq
DB search
MSAVKFELGQDGIAVVTLDMPGRSMNVLNEELMGPYAEALTRIETDAAVKGVVLTSGKPE
FLAGADLDTVYKITEAQQAFDLAEAFKSLLRRMEKCEKPIVCALNGTALGGGLELALACN
YRVALNNPKAKFGLPEVKLGLLPGGGGTQRLPRIIGIQGALEMMTQGSELRVDQAVKKGI
VNETADSIEEMIAKARAWAVANPKASQPWDVKGFKFPGGDSKHPAIAQIWAIAPSMANAK
AFGNYPAIKHIASCVFEGGITDIDTGLKVESRYFAACVLSQESKNMMNTLWYQLNSIKKG
QSRPSAPAKSTVKKVGILGAGMMGAGIAYVSAKVGIEVVLIDATQEGADKGKAYSTNLLD
KAIAKKRSTPEKKEALLNLITATTDYSKLEGADLVIEAVFEDRAVKADVTARAEAVIPAT
AVYASNTSTLPITGLAEASKRPNQFIGLHFFSPVDKMPLVEIIMGEKTDDATLAKGFDYV
QQIGKTPIVVNDSRGFFTSRVFGTFLMEAAAMVGEGVHPRSIEMAGLEAGMPMPPLALYD
EVSLSLSLLIMKQTKKDMEAAGQTFPEHPGYSTLITVAEKHGRIGKKAGKGFYDYTPAGK
TLWTGLAEEFPVAKEQPTSQELQDRLMYIQANEAARCMQEKVLRSVADGNIGSIFGLGFA
PFTGGMLQFINAKGLPQFVKRCEELAAKYGERFKPASMLVELAAQGKKLEDNLN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagtgaaatttgaactcggtcaggatggcatcgcagtggtcacactggacatg
cccggccgttccatgaacgtattgaacgaagaactgatgggcccctacgcggaagccctg
acccgcattgaaaccgacgctgctgtaaaaggcgtggtgctgacttccggcaagcccgag
tttttggctggtgctgacctggacacggtttacaagattaccgaagctcagcaagccttt
gatttggctgaagccttcaagagcctgttgcgccgcatggaaaaatgcgaaaagccaatc
gtgtgcgccttgaacggcacagcactgggtggtggtctggaactggccctggcctgtaac
taccgcgttgcactgaacaaccccaaagccaagttcggtttgcctgaagtgaagctgggc
ctgttgcccggtggcggtggtacacagcgtttgccacgcattatcggtattcagggtgct
ctggaaatgatgacccagggttccgagttgcgtgttgaccaggccgtgaaaaaaggcatc
gtcaacgaaacagccgattccatcgaagaaatgatcgccaaggcacgtgcctgggccgtc
gcaaaccccaaagcttcgcagccttgggatgtaaagggcttcaagttccccggtggcgat
tccaagcaccccgccattgcgcaaatctgggcgattgcaccgagcatggccaacgccaag
gcattcggcaattacccagccatcaagcacatcgcaagctgcgtgttcgaaggcggcatt
accgacatcgacaccggcctgaaagtggaaagccgttacttcgctgcctgcgtactgtcg
caagaaagcaagaacatgatgaacacgctgtggtaccagttgaacagcatcaagaaaggc
caaagccgccccagcgcacctgcaaaaagcacggtgaaaaaagtgggcattttgggcgca
ggcatgatgggtgccggcattgcttacgtgtctgcgaaagtgggcattgaagtggtgttg
attgacgcaacccaggaaggcgccgacaaaggcaaggcctacagcaccaacctgctggac
aaagccattgccaagaagcgcagcacacctgaaaagaaagaagcactgctgaacctgatt
actgcaaccaccgactattccaagctggaaggtgcagacctggtgattgaagccgtgttt
gaagaccgtgccgtgaaggccgatgtaaccgcccgtgctgaagcagtgattcctgcaaca
gccgtgtatgcatccaacacatcgaccctgccaatcaccggcctggctgaagcctccaag
cgccccaaccagttcatcggtttgcacttcttcagcccagtggacaaaatgccgctggtt
gagatcatcatgggcgaaaaaaccgatgatgcaacattggccaagggcttcgactatgtt
caacaaatcggcaagacaccgattgtggtgaacgacagccgtggcttcttcaccagccgc
gtgttcggtaccttcctgatggaagccgctgccatggtgggcgagggtgtacacccccgt
tcaatcgaaatggcaggcctggaagccggcatgcccatgccacccctggcgttgtatgat
gaagtgtcactgagcttgagcttgctgatcatgaagcagaccaagaaagacatggaagcc
gcaggacaaactttcccagagcatccaggctacagcaccctgatcacggttgctgaaaag
catggccgcatcggcaaaaaagcaggcaagggattctacgactacacacccgcaggcaaa
accctgtggaccggtttggccgaagaattccctgttgcgaaagagcagccaacttcacag
gaactgcaagaccgtttgatgtacatccaggccaacgaggccgcacgctgcatgcaggaa
aaagtgctgcgctcggtggctgatggcaacatcggttcaattttcggtctgggttttgca
ccatttaccggcggcatgttgcagttcatcaatgccaaaggattgccacaattcgtgaag
cgttgcgaagaactggccgccaagtatggcgaacgtttcaagcctgccagcatgctggtg
gaacttgctgcccaaggcaagaagcttgaagataatttgaactaa
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