Limnobacter thiooxidans: RGQ30_05500
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Entry
RGQ30_05500 CDS
T09704
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lto
Limnobacter thiooxidans
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lto03016
]
RGQ30_05500
Enzymes [BR:
lto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RGQ30_05500
Transfer RNA biogenesis [BR:
lto03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RGQ30_05500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BET25049
UniProt:
A0AA86M827
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Position
602037..604070
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AA seq
677 aa
AA seq
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MNLYYEEAGAFKVGRVLQDQGNAFQVETLHGKRTKVKSNSVMLKFDTLECAEFHTQVEAL
AKDVDTEFLWECAPEGEFDFNVMAVEYFGEKPTVVQQAATLAALHAAPIHFHRKGKGMYR
AAPPEILQAALAGLEKKRLAAEQQQAWADALVRRELPEGFAKQAAVLLVRPDKNSAEYKA
LMLACTEAGRSPDVLLIECGAFKSVHEMMRARFAAVYFPKGPEIDLPAPDVPADLADLPV
ANVRAFSIDDISTTEIDDAFSVVWLDETRARIGVHIAAPALLIPRGSPYDRVARERLSTV
YAPGDKITMLPDQVVELATLAEGRTVPSVSIYVEVSTETGELLSEPYSAIEQVPMAANLR
HNHLDAALSKEVLEDPELNQLDVVGEFFPALKMLWKSSCVLRMEREIARGQPEKHTRIDF
NFYVAEDGTVEIQPRRRDAPLDLLVAEWMIYVNREWGGMLDECKVTGIYRVQPPMGRVRM
STHAAPHVGLGVPQYAWSTSPLRRYVDLVNQQQLISLLRQEPPVYTATDAELLSAVNSFD
VTYKAYAEFQQSMERYWCLRWIQQKGRKQFDGVVVKDELVRLDDIPLFVRLVGVTSPGRG
VQVELELDQVDELTLTVSCKLLALKKGTPTRLLDDEEEEEVEAESSSAAPDETGLPELPA
SVADVNVDAEQSGEPQA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgtattatgaagaggccggtgccttcaaagtaggtcgcgtgcttcaagaccag
ggcaatgcctttcaggtagaaaccttgcatggcaaacgcaccaaggtgaaatccaacagc
gtgatgctgaaattcgatacgctggaatgcgcggaatttcacacccaggttgaagcattg
gccaaggacgtggacactgagtttttgtgggaatgcgccccggaaggcgagttcgatttc
aatgtgatggccgtggaatattttggcgagaagcccaccgtagttcaacaggccgccacc
ttggctgctctgcatgcggcgcccattcattttcaccgcaaaggcaagggcatgtaccgt
gccgcgccgcctgaaattttgcaggcagccctggcgggcctggagaaaaagcgcctggct
gcagaacaacagcaggcctgggccgatgctttggtgcgtcgcgaattgccggaaggtttt
gccaaacaggcggcggtattgctggtgcggcccgataaaaacagtgcagagtacaaggcc
ttgatgctggcctgcacggaagcaggccggtcacccgatgtgttgctgattgaatgcggt
gcgttcaaatcggtacatgaaatgatgcgcgcgcgctttgcggccgtgtactttcccaag
ggcccggaaattgacctgcctgcacccgacgtgccggccgatctggccgatttgcctgtg
gccaatgtgcgtgccttttcaatcgacgacatttcaaccaccgaaattgatgatgccttc
agcgtggtgtggctcgatgaaacccgcgcgcgcatcggcgtgcacattgcggccccagcg
cttttgattccccgtggcagcccttacgaccgtgtcgcccgcgaacgactttccaccgtg
tatgcacccggcgacaagatcaccatgctgcctgaccaggtggtcgagttggccacgctg
gcagaaggccgcaccgtgcccagtgtcagcatttacgtagaagtgagcacggaaacaggc
gagttgctcagtgagccctacagcgcgattgaacaggtgcccatggccgccaacctgcgc
cacaatcacctggatgcagccctgtccaaggaagtgctggaagaccccgagttgaatcag
ctcgacgtggtgggcgagtttttcccggctttgaaaatgttgtggaaaagttcgtgcgtg
ttgcgcatggaacgtgaaattgcgcgcggccagcccgagaaacacacgcgaatcgatttc
aatttctacgtggcagaagatggcacagttgaaattcaaccccgccgccgcgatgccccg
ctggatttgttggtggccgaatggatgatctacgtgaaccgggaatggggtggcatgctg
gatgagtgcaaggtcaccggcatttatcgggtgcaaccgcccatgggccgcgtgcgcatg
tccacacacgccgcgccacacgtgggcctgggtgttccgcaatatgcgtggagtacttcg
ccccttcgccgttacgtggatttggtgaaccagcaacaattgatttccctattgcgccag
gagccgcccgtgtacaccgcgaccgatgcggaactgttgtcggccgtgaacagttttgat
gtcacctacaaagcctacgccgagtttcagcaaagcatggaacgctattggtgcctgcgc
tggattcagcaaaaaggccgcaagcagtttgatggcgtggtggtgaaagatgaactggtt
cggctcgacgacattcccctgtttgttcgcctggtgggtgtgacatccccaggccgtggc
gttcaggttgaattggaactggaccaggtggatgaactgacactgaccgtgtcctgcaaa
ttgctggctttgaaaaagggcacgcccacgcgcttgctcgatgacgaggaagaagaggaa
gttgaagccgagtcttcctctgctgcaccagacgaaacaggcttacccgagctgcccgct
tcagtggcggatgtgaatgtggatgctgagcaatctggagaaccccaggcgtga
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