Limnobacter thiooxidans: RGQ30_05640 Help Entry RGQ30_05640       CDS       T09704                                  Symbol uvrA_1 Name (GenBank) excinuclease ABC subunit UvrA   KO K03701   excinuclease ABC subunit A Organism lto  Limnobacter thiooxidans Pathway lto03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:lto00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     RGQ30_05640 (uvrA_1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:lto03400]     RGQ30_05640 (uvrA_1) DNA repair and recombination proteins [BR:lto03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      RGQ30_05640 (uvrA_1)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      Supressor       RGQ30_05640 (uvrA_1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ABC_tran UvrA_inter AAA_21 AAA_29 SMC_N AAA_16 nSTAND1 AAA_23 RsgA_GTPase AAA_22 nSTAND3 AAA_25 AAA_33 NACHT UvrA_DNA-bind AAA_18 ATPase Viral_helicase1 DUF4350 DnaJ_CXXCXGXG Rad17 NMDAR2_C DUF87 Motif Other DBs NCBI-ProteinID:  BET25063 UniProt:  A0AA86MAL9 LinkDB All DBs Position 621523..627210 Genome browser AA seq 1895 aa AA seqDB search MTSKAKKTENSQYLGNVIRIKGARQHNLKNVDIDIKTGEITVFTGVSGSGKSSLVFDTLY AEGQRRYVETFSPYARQFLDRMDKPDVDSIDGVLPAIAIDQTNPVRTSRSTVGTMTEIND HLKLIYARAAHLHCRQCGQWVREDTVASIKQSILHKAAAQNDPRLVVTFPVRVPAKFTAQ EIEDFLSAQGYTRIHRETPIKKGRTVVEKLLDVVQDRFRVAAVEESRFSDAVASALHRGK GKVNVFALPESGEEGASATETTEPWRYSEGLHCATCDLDYSSPLPSHFSFNSPLGACDTC RGFGRVIGIDYGLVIPDENKSLEEGAVKPWTTESFKSCQKDLVRFAKKRGIATNIAYKHL PEEHKLWVIEGDANFDGNWEGNLFYGVARYFEWLESKTYKMHVRVMLSKYRSYTPCPDCN GSRLKPDSLLWKLPADTALYSIFDIMQLPLLTVATLFKNLQLPGALDEASDLVLQEIRTR LGFLIQVGLGYLTLDRQSRTLSGGEVQRINLTTALGSSLVNTLFVLDEPSVGLHPRDIAR VAQAMQRLKEAGNTLVVVEHDPQLMNQADRLVDIGPGPGEAGGHIVFDGAPAAIEQSGSL TARYLKGELKVVERIKPLGDAKEHLVLTGVRANNLKNIDFKLPLNRLVVLTGVSGSGKST LVQDVLVPAIRKIKGEPTEAPGEFDSLEGVEHITQLAFVDQSPIGKTTRSNPASYVGAFD ELRKLFSKTKIAVERDYKPGFFSFNSGDGRCPMCGGNGFEHVEMQFLSDVYLRCGECNGT RYRPEALEVTLERKGQVLNMAQVLELTVDQALDLFEKDTALLKTLQPLALVGLNYLRLGQ PVPTLSGGEAQRLKLAGFLAELKPSASGQKLAKKGDLFVFDEPTTGLHFDDVAKLMRSLR LLQEAGHSVLIVEHNLDVICAADWLIDLGPEAGEYGGELVDQGTPEQLAKTKNSHTGVAI KQYLAQSNLLHAADLNKASNSSDHMVAEGAALYGLNSAHTRRGLTDGIEILHAREHNLKN VSLTIPREKMTVITGPSGSGKSTLAFDILFSEGQRRYLESLNAYARQFVQPAAKPDVDAI FGIPPTVAIEQRTSRGGRKSTVATVTEVYHFLRLMFVKLGTQHCPTCEVPIAPQSMDSML AQIMQHYKGQEITLLAPLVQGRKGIYNEIAKWAVDRGYDRLRVDGEYVPTNPWPKLARYQ EHHIELPVKTLSIQAKGEKELREVLALALEYGKGTVMVEAPGSKGKHEGAAPAIRFYSTK RACPSCARSFPELDPRLFSYNSKHGWCASCFGVGEEVEGFDAETTGEEGKWLSEQDKSAE DVAENDDGTYLGNALRESLACAACNGQRLNPTALAVKFKNSNIAQLADQTVSDALQWVDQ LELDERETAIAKDIRIEMAGRLKFLKQVGLDYLHLNRSAPTLSGGEAQRIRLASQLGTNL RGVCYVLDEPTIGLHTRDNHRLLDALEELRAKGNTLVIVEHDIDTMNRADRLVDIGPGAG KLGGEIISQGTVAEVKADKNSLTGRYLKQPIPHLLQPKRPVEKDTPRLRIKGAKLHNITG LDVDIPLGRLVAITGVSGSGKSTLARDILLANMRQYVANQNKKGKPTHNWFACDNIENAE RVARVLEVDQTPIGKTPRSCPATYIGFWNRIRNVLADTIEARMRGFAANRFSFNAGPGRC PVCDGQGMQTIEMNFLPDVKVVCEACRGKRFNPETLQVTWRDKTAAEILNMSCSEAAPFF DAHPAIAQALQLLNDVGLGYLTIGQPSPTLSGGEAQRIKLVTELVKVRENKAGVQMSPPT LYVLDEPTVGLHMNDVEKLIAVLHRLVDAGHTVVVIEHDLDLTAQADWVIDMGPEAGSGG GQLVAQGSPQEIGKLKGKKAGYTTQAMADFYQSRQ NT seq 5688 nt NT seq  +upstreamnt  +downstreamnt atgaccagcaaagcaaagaaaaccgagaattcccagtaccttggcaatgtgattcgaatc aagggcgcccgccagcacaacctcaaaaacgtcgacatcgacatcaagaccggtgaaatc accgtgttcactggcgtgtcaggcagtggaaaaagctcactggtgttcgacacactgtat gccgaaggccagcgccgctacgtggaaacgttttcgccctatgcccgccagttcctggac cgcatggacaaacccgatgtagacagcatcgatggcgtattgcccgccattgcgattgac cagaccaacccggtgcgcacctcccgcagcaccgtgggcaccatgactgaaatcaacgat cacctgaagctgatttacgcccgcgctgcccatttgcattgccgccagtgcgggcagtgg gttcgtgaagacacggtggccagcatcaagcaatcgatactgcacaaagccgctgcgcaa aacgacccgcgccttgttgttacattcccggtgcgtgtacccgcaaaattcaccgcacag gaaattgaagactttctgagtgcccaaggctacacccgcattcaccgggaaacgcccatc aagaaaggccgcaccgtggttgaaaagctgctggacgtggtccaagaccgcttccgtgtt gccgctgttgaggaaagccgtttcagcgacgccgtggccagtgccctgcaccggggcaag ggcaaggtcaatgtgtttgccctgcctgaaagtggcgaagaaggtgcaagtgcaaccgag accactgagccctggcgctattccgaagggctgcactgcgccacttgcgacctggattat tcaagccccttgcccagccacttcagcttcaattcccccttgggtgcctgcgacacctgt cgcggttttggccgcgtcatcggcattgattacggcctggtgattcccgatgaaaacaaa tcgctggaagagggcgcagtcaaaccctggaccacggaaagcttcaaaagctgccagaaa gacctggtgcgcttcgccaaaaaacggggcattgccaccaacattgcctacaagcatttg cctgaagaacacaagctgtgggtgattgaaggcgacgccaattttgatggcaactgggaa ggcaatttgttctacggcgtggcccgctatttcgaatggctggaaagcaaaacctacaaa atgcatgtgcgcgtcatgctgtcgaagtaccgcagttacaccccttgccccgattgcaat ggctcgcgcctgaagcccgattcgctgctttggaaactgcctgccgacaccgcgctttac agcatttttgacatcatgcagttgcccttgctgactgttgccacgctgttcaaaaacctg caactgcccggcgcactcgatgaagccagcgatctggtgctgcaggaaattcgcacacgc ctgggctttttgattcaagtgggtttgggttatttaacgcttgatcggcaaagcagaacg ctcagcggcggcgaggtgcagcgcatcaacctgaccacggccttaggcagttcactggtt aacaccctgtttgtgctggatgaaccctcggtgggtttgcacccccgcgacattgcccgc gtggcccaggccatgcagcgtttgaaagaagcgggcaacaccctggtggtggttgagcac gacccacagttgatgaaccaggccgaccggctggtcgacattggcccagggcctggcgaa gcaggcggccacattgtgtttgatggtgcacctgctgccattgaacaatctggttcactc accgcgcgctacctgaaaggcgagctgaaagtggtggagcgaatcaagccactgggcgat gcgaaagaacaccttgtgctgaccggtgtgcgtgccaacaacctgaaaaatattgacttc aaactgccgctgaaccgcctggtcgtgctcaccggtgtgtcaggttcaggcaagtcaacc ctggtgcaagacgtgctggtgccggcgattaggaagatcaagggcgaacccactgaagca cccggcgagttcgattcattggaaggtgttgaacacattacacaactggcttttgtcgat caaagcccgattggcaaaaccacgcgcagcaaccccgccagttacgtgggtgcatttgat gaactgcgcaagctgttttccaaaacaaaaattgccgtggagcgcgattacaagcccggc tttttcagtttcaacagtggcgacggccgctgccccatgtgcggcggcaacggctttgaa catgttgaaatgcagtttctcagcgatgtgtatttgcgctgtggcgaatgcaatggcacg cgctaccggcccgaggctttggaagtcacgctggagcgaaaaggccaggtgctcaacatg gcccaggtgctggagttgactgtagaccaggcactcgacctgttcgaaaaagacaccgcc ttgctgaaaaccctgcagccacttgcgcttgttggcctgaattatttgcgccttggccaa cctgtgcccacgctcagtgggggcgaagcacagcgcctgaaactggccggtttcctggcc gagttgaaaccctcagcaagtggccagaagctggcgaaaaaaggtgacctgttcgtgttt gatgaacccaccactggtttgcattttgacgatgtggccaagttgatgcgttcactgcgc ctgttgcaggaggccgggcacagtgtgctgattgtggagcacaatctcgatgtcatttgc gctgctgactggctgatcgacctgggccccgaagcgggcgaatacggcggcgaactggtg gaccagggtacacccgaacaactggccaaaaccaagaacagccacacgggtgtggccatc aagcagtacctagcgcaaagcaatttgctgcatgcagccgacttgaacaaggccagcaac agcagcgaccacatggtggcagaaggagccgcactgtatggcttgaacagtgcccacacg cggcgtggcctgaccgacggcattgaaattcttcatgcccgtgaacacaacctgaaaaat gtcagcctgaccattccgcgtgaaaaaatgacggtgatcaccgggccttccggcagcggc aagtccacgttggcatttgatattttgttctctgaagggcagcgccgttaccttgaaagt ttgaacgcctacgcacgccagtttgtgcagcctgcagccaagcccgatgtagatgccata ttcggcataccacccactgtggccattgagcagcgcaccagccgtggcgggcgcaaaagt accgtggccaccgtgaccgaggtgtatcacttccttcgcctgatgtttgtcaagctgggt acccagcattgccccacctgcgaagtgcccattgcaccccaaagcatggacagcatgctg gcgcaaatcatgcagcattacaaaggccaggaaatcacgttgctggccccgttggtacag ggccgcaaaggcatttacaacgaaatcgccaagtgggctgtcgaccgtggctatgaccgc ctgcgcgtggatggtgagtatgtgcccaccaacccctggcccaagctggcccgctaccag gaacaccacattgaactgcccgtcaaaaccttgagcattcaagccaagggcgagaaagaa ctgcgcgaagtactggccctggcgcttgaatacggcaaaggcactgtgatggtggaggca cccggcagcaaaggcaaacacgaaggtgcagcacctgccattcgcttttattccaccaag cgcgcctgccccagttgcgcacgcagcttccccgagctcgacccgcgcctgttcagctac aacagcaagcatggctggtgcgcaagctgctttggcgtgggcgaagaagtggaaggcttt gatgcagaaaccaccggcgaagaaggcaagtggctttccgagcaggacaaaagcgctgaa gatgtggccgagaacgatgacggcacttacctgggcaacgcactgcgtgaaagcctggcg tgcgctgcttgcaacggccagcgcctgaacccaaccgcactggctgtgaagttcaagaac agcaacattgcccaactggccgaccaaacggtcagcgacgccttgcagtgggtagaccag cttgaactggatgaacgcgaaaccgccattgccaaagacattcgaattgaaatggccggg cgtctgaaatttctgaaacaagtgggtcttgattacttgcacctgaaccgcagcgcgccc accttgagtggtggtgaagcgcagcgcattcgtttggcctcgcaactgggcaccaacctg cgtggcgtgtgctatgtgctggacgagcccaccattggcctgcacacccgcgacaaccac aggcttctggatgcactggaggaactgcgcgccaagggcaacacattggtgattgtggag cacgacattgacaccatgaaccgtgccgaccgccttgtagacattggcccaggtgccggc aaactggggggtgaaatcatttcccagggcaccgtggctgaagtgaaagcagacaagaat tcgctgacgggccgttatttgaagcagcccattccgcacttgttgcaacccaaacgcccg gttgaaaaagacacaccgcgcttgcgtatcaagggcgcaaagctgcacaacattaccggg cttgatgtggacattcccctgggccgccttgttgcaatcaccggtgtttcaggcagtgga aaatcaacgcttgcccgcgacattctgctggccaatatgcggcagtacgtggccaatcaa aacaaaaaaggcaaacctacacataactggtttgcctgcgacaacattgaaaacgcagaa cgggttgcccgtgttcttgaagtggaccaaaccccgattggcaaaacaccgcgcagttgc ccggccacctacatcggcttttggaaccgaattcgcaacgtgctggccgacaccattgag gcccgcatgcgcggctttgcagccaaccgcttcagcttcaacgcagggccgggccgctgc cctgtgtgcgatggccaaggcatgcaaaccattgaaatgaacttcctgcccgatgtcaaa gtggtgtgcgaggcttgccgtggaaaacgtttcaacccggaaaccctgcaggtcacctgg cgcgacaaaacagctgcagaaattttgaacatgagctgttcagaagcagcaccgtttttt gacgcccacccggccattgcgcaggccttgcagttgctcaatgacgtgggcctgggctac ctcaccattggccagcccagccccaccctgagcggcggtgaggcccaacgcatcaagctg gtcaccgagttggtgaaggtgcgggaaaacaaggccggtgtgcaaatgagcccgcccacc ctgtatgtgctggatgaacccacggttggcctgcacatgaacgacgtggaaaagctgatt gccgtgcttcaccggctggtggacgcaggccacaccgtggtggtgattgaacacgacctg gacctgactgcccaggccgactgggtcatcgacatgggcccggaagcaggttcaggcggt ggccagttggttgcacagggcagcccgcaagaaattggcaagctcaagggcaaaaaagcg gggtacaccacgcaggccatggcggatttttatcaatctcggcaataa

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