Limnobacter thiooxidans: RGQ30_05870
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Entry
RGQ30_05870 CDS
T09704
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lto
Limnobacter thiooxidans
Pathway
lto02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGQ30_05870 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lto03021
]
RGQ30_05870 (rpoD)
Transcription machinery [BR:
lto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGQ30_05870 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BET25086
UniProt:
A0AA86JDV9
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All DBs
Position
658511..661081
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AA seq
856 aa
AA seq
DB search
MFKILNIFSKTQEQKAESGHKTKSANSPTVISQQTDSHTQIPVGQKPEKESSTRASKRKG
ASSMVGKKVSPQQATAKEAKNTTVVKNTESKKTAAAETPVSKNAAAPSIDAPKRGRKPKV
EDSAVDTQVDLDAEESQPKKRGRKPKALAEAAPVVAEAPKGRGRPPKSAGKPKAEDDDED
DMDAGADASLDSDDVPEDDDSDAKKADLVILPKRGRGSKAKDKALINSAYLSSANATVEE
LELRRTQLKTLIKMGKERGYLTFAEINDHLPDDVTDGEVIEAMVSTFHDMGITVYEQAPD
AEALLMNDNAPVGTSAEDAEEEAEAALSNVDSEFGRTTDPVRMYMREMGTVELLTREGEI
EIAKRIEAGLKDMVQAISACPAIVEDVVGLGQRIAEGTSTVDEVVDGIVDDSIPDDMVVA
AAPEEISEDEEGDDEEEGNDGGTTSGMSARQLEDLKKNSLAVFAEIEKQFAKLKKARADG
GYNTAAYKKAKEAIAEQFMKIRFTAKQVERLCSILREQVDSVRKIEREIYDIAVNRVGVP
REQFIDKFRGHEVDAAWVGVFSASNAAWAETWARNVPAINELQQKLVAIQDMVSLPLNDL
RTINKQMVSGENRARLAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGIEP
DPATLAERMEMPEEKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDNHTLAPQDAAQYS
SLRFVTKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSDKLKSFLEGE
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaatactcaacattttttcaaaaacacaggaacagaaagccgaatccggccac
aaaaccaagtctgcgaactcacccaccgtgatttcccagcaaaccgattcacacacacag
attcctgttggccaaaagccggagaaggaatcctccactagggcatccaaacgcaaggga
gcgtcgtcaatggtagggaagaaggtttctcctcaacaggcaactgcaaaagaagcgaaa
aatacgaccgtggtaaagaatacagaatccaagaaaacagcagctgctgaaacgcctgtg
agcaagaatgccgctgcgccctcgattgatgcgcccaagcgtggtcgaaagcccaaagtg
gaagattcggcagtagatacccaggtcgatcttgacgccgaggaatcacagccgaagaag
cgcgggcgcaaacccaaggccttggctgaggctgcgcctgttgttgctgaggcgcccaag
ggtcgtggccgtccaccgaagtctgccggcaagcccaaagccgaagatgacgatgaagac
gacatggacgctggcgccgatgcatcgcttgattctgatgatgtgcctgaagacgacgat
tcagacgcgaaaaaagcggatctggtgattttgcccaagcgcggtcgtggctccaaggcc
aaagacaaggccttgatcaattctgcctatctgtcgtcggccaacgccacggttgaagaa
cttgaattgcgccgcacgcagcttaaaaccctgatcaagatgggtaaagagcgcggctac
ctgacttttgccgagatcaatgaccacttgcccgatgacgtcaccgacggtgaagtgatt
gaagccatggtcagcaccttccatgacatggggatcactgtttacgaacaggcccctgac
gctgaagcgctgctgatgaacgacaatgcgcctgtgggtacttcggctgaagatgccgaa
gaggaagcagaagccgccttgagcaacgtggactccgagtttggccgcactaccgaccct
gttcgcatgtacatgcgtgaaatgggcacggtcgagttgctgacccgtgaaggcgaaatt
gagattgccaagcgaattgaagccggcctgaaagacatggtacaagccatttctgcctgc
cccgccattgttgaagacgtggtgggtctgggtcagcgaattgctgaaggcacatccacc
gtggatgaagtggtggatggcattgtggatgactccatccctgacgacatggtcgtggct
gcggcacctgaagaaatcagtgaagacgaagagggtgatgacgaggaagaaggcaatgac
ggtggcaccacctccggcatgtcggcgcgtcaacttgaagacctgaagaagaactcactg
gctgtatttgcagaaattgaaaagcagtttgcgaagctgaaaaaagcgcgtgcagacggc
ggctataacactgcggcgtataaaaaggccaaggaagcgattgccgagcagttcatgaaa
attcgctttaccgccaagcaggttgagcgtttgtgcagtattttgcgtgaacaggtcgac
agcgtacgcaagatcgagcgtgagatttatgacatcgctgtgaaccgtgtgggcgtaccc
cgcgagcagttcatcgacaagttccgtggccatgaagtggatgccgcttgggttggcgtg
ttcagcgcatccaacgcagcatgggctgaaacttgggcgcgtaatgtgccagccattaac
gaattgcagcaaaaactggttgccattcaggacatggtgtcattgcccttgaacgatttg
cgcaccatcaacaagcaaatggtttccggtgagaaccgtgcccgtttggccaagcgtgaa
atgattgaagccaacttgcgtttggtgatttcaattgcgaagaagtacaccaaccgtggt
ttgcagttcctggacctaattcaggaaggcaacgtgggcttgatgaaagcggtggacaag
tttgaataccgccgtggttacaagttttcaacttatgccacatggtggattcgccaggcg
attacccgttccattgcagaccaggcgcgcaccatccgtattccggtgcacatgatcgaa
acgatcaacaagatgaaccggatcagccgccagattctgcaggaaacaggcattgagccc
gatccggccactttggccgagcgcatggaaatgccggaagagaagatccgcaagatcctg
aagatcgcgaaagaaccgatttcgatggaaacaccgattggcgatgacgacgattcacac
ttgggcgacttcattgaagacaaccacaccctggctcctcaagatgcagcgcagtacagc
agcctgcgtttcgtgaccaaggatgtgctggattcactgaccccgcgcgaagccaaggta
ttgcgcatgcgtttcggtattgaaatgagcactgaccacacgctggaagaagtgggcaag
cagtttgatgtcacgcgtgagcggattcgccagattgaagccaaagcgctgcgcaagctg
cgtcaccccagccgttcagacaagctgaagagcttcctggaaggcgagtaa
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