Limnobacter thiooxidans: RGQ30_08390
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Entry
RGQ30_08390 CDS
T09704
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
lto
Limnobacter thiooxidans
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lto03032
]
RGQ30_08390
03036 Chromosome and associated proteins [BR:
lto03036
]
RGQ30_08390
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_08390
DNA replication proteins [BR:
lto03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RGQ30_08390
Chromosome and associated proteins [BR:
lto03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
RGQ30_08390
DNA repair and recombination proteins [BR:
lto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
RGQ30_08390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
TetR_C_30
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
BET25338
UniProt:
A0AA86IY11
LinkDB
All DBs
Position
939787..940083
Genome browser
AA seq
98 aa
AA seq
DB search
MTKSELINQLVKRFPKLPVRDTDFAVKSILDTMTQALADGQRIEIRGFGSFSLTRRPQRV
GRNPKSGEQVVVPEKRVPHFKPGKELRERVDLYSKKEN
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatcagaactcatcaaccagctggtcaagcggtttcccaagttgcctgtgcgc
gacaccgacttcgctgttaaaagcattctcgacaccatgacccaagctttggcggatggt
cagcgtatcgaaattcgtgggtttggcagtttttccttgacccgtcgtcctcaacgagtg
ggccgcaatccaaagtctggtgagcaggtcgtcgtgcccgaaaagcgtgttcctcacttt
aagcccggcaaagagctgcgtgagcgagttgatttatactccaagaaagagaattga
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