Limnobacter thiooxidans: RGQ30_15200
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Entry
RGQ30_15200 CDS
T09704
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGQ30_15200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lto03019
]
RGQ30_15200
03009 Ribosome biogenesis [BR:
lto03009
]
RGQ30_15200
Enzymes [BR:
lto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RGQ30_15200
Messenger RNA biogenesis [BR:
lto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGQ30_15200
Ribosome biogenesis [BR:
lto03009
]
Prokaryotic type
rRNA processing factors
RGQ30_15200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
BET26019
UniProt:
A0AA86J2U2
LinkDB
All DBs
Position
complement(1676043..1679117)
Genome browser
AA seq
1024 aa
AA seq
DB search
MKRMLFNATHSEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRVEPSLEACFVNY
GEDRHGFLPFKEISRQYFKEGVEAGKARIQDVVKEGQELFVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEERQELREALDKLEYPKGMSIIARTAGIGRSVEELQ
WDLNYLLQLWTAIDGAGKSANGAFLIYQESSLVIRAIRDYFSPDIGEVLIDTDEIYDQAK
QFMQHVMPDMMNLVKRYRDDIPLFSRFQIEHQIETAYSRMVPLPSGGAIVIDHTEALVSI
DVNSARSTRGTDIEDTALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEKASNQKEVEQR
VKDSLHFDRARVQMGKISRFGLMELSRQRIRPALNEGSHTTCPRCNGTGVIRDTESTALH
VLRILQEEAMKEGTASVHTQVPVDVATFLLNEKRSEIYKLEARLKVNVLLIPNKHLETPH
YEITRLRHDDERLEDPRQSFELATSKDEQSYYDKKVEGEAVKRQEAVIKGVIPTQPAPPH
QERKPKTELVVAAAAPAAPSLIQRIIAWFKRDTNVEVPAVVIEQKTSDRGGRGQGRPQGD
RNDSRGGRGRNRRRGGGRGREDEATGTNPVAEDEVKVADTQQPRSAQQNRGGRGKPREDR
AAGAEALELKPLAAVDAVEGDAADAAEQSERTGGRRRRRRGRGGRGAGEGETGLAAEQSA
LQSEDAFQAADAAEDEELANKIAETMSYGSEEEAGSEEPRRRRRRRGRGGNRDGVRDSSD
AEQAAEGSDSVESAPAPEMAETASAPAPVIAATGLNVSQMGLPAEPTAMGSTENNPDESN
VQSADVQAVQSVIAAVAQTAEVEPAKTEVQQEALATEPTPAVEAVVVESVQSAPVAEVTL
AAVEKVEAALVETAAPAEIAEPAAEVKAPVTAPAATVAATEANVQKGAPAPAPKLDRTSL
EQMLNSAGMLWVETDHEKWSVVQSKLSESTKPARVPRERKPVVQISTENLVLIETKPEFK
SSAN
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttatttaacgcaactcattcagaagagttgcgggtcgccattgtcgac
ggccagaaacttatcgacattgacattgaaacagcaggccgtgaacaacggaaaagcaac
atttacaagggtgtcattacccgcgtagaacccagtctcgaagcctgtttcgtcaattac
ggcgaagaccgccacggttttctgccattcaaggaaatttcccgtcagtatttcaaggaa
ggtgttgaagccggcaaagcccgcattcaagacgtcgtaaaagaaggtcaggaactgttt
gttcaggtcgaaaaagaagagcgtggcaacaagggcgcagccctgactaccttcatctcc
ctggcaggccgctacttggtgctgatgcccaacaacccccgcggaggcggtgtatcccgc
agaatcgaaggcgaagaacgtcaagaactgcgtgaagcgctggacaagctggaatacccc
aagggcatgagcatcatcgcccgcacagccggtatcggccgctcggttgaagaactgcag
tgggacctgaattacctgctccaactgtggacagccattgacggtgctggcaaatcggcc
aacggcgccttcctgatttaccaggaaagcagcctggtgattcgtgccattcgcgattac
ttcagcccggatattggcgaagtactcatcgacaccgacgaaatttacgaccaggccaag
cagttcatgcagcatgtcatgcccgacatgatgaacctggtaaaacgctaccgcgacgac
attccgttgttcagccgtttccagatcgaacaccagattgaaacggcctacagccgcatg
gttcccctgccctcgggcggcgccattgtgattgatcacacggaagcgctggtgtccatc
gatgtgaactcggcccgttcaacacgcggcacagacattgaagacacggccttgcgcacc
aaccttgaagcggctgaagaagtagcccgccagttgcgcctgcgtgacttgggcggcttg
atcgtgatcgattttatcgacatggaaaaagccagcaaccagaaggaagtggagcaacga
gtcaaggacagccttcattttgaccgcgcacgcgtgcaaatgggcaaaatcagccgcttc
ggcctgatggaattgagccgccagcgtatccgccctgcccttaacgaaggctcgcacacc
acttgcccacgctgcaatggcacgggtgttattcgcgatacagaaagcacggcattgcac
gtactgcgtattttgcaggaagaagccatgaaagaaggcactgccagcgttcacacgcag
gtgccggtggatgtggccactttcttgctgaatgaaaagcggtctgaaatctacaagctg
gaagcgcgtttgaaggtcaacgtgctgttgattccaaacaagcatctggaaactccacat
tacgagattacacgccttcgccatgacgatgagcgccttgaagacccacgccagagcttc
gagctggccacctccaaggacgagcaaagttactacgacaagaaagtggaaggcgaagca
gtaaagcgtcaggaagcggtaatcaagggtgtgattccaacccagcctgccccgccccat
caggaacgcaagccaaaaacagaactggttgtggctgctgctgcccctgcggcaccgtct
ttgattcagcgcattattgcttggttcaagcgcgataccaatgtggaagtaccagcagtg
gtgatcgagcagaaaaccagtgaccgtggaggtcgtggccaaggtcgcccacaaggtgac
cgcaacgactcacgcggtggtcgtggacgaaatcgccgtcgtggtggcggacgtggacgc
gaagatgaagcaacgggtacaaacccagttgcggaagacgaagtcaaggtagctgacaca
caacagcctcgttctgcacaacagaatcgtggtggtcgtggcaaaccacgtgaggaccgc
gctgcgggtgccgaagcgcttgaattgaagcctttggccgctgtagatgcagtggaaggc
gatgcagcagatgctgcagagcaaagtgaacgcactggtggtcgtcgccgccgtcgtcgc
ggccgtggtggtcgcggagccggtgaaggtgaaacaggcttggcggctgaacagtctgca
ttgcagtctgaagacgcatttcaggcagccgatgcagctgaagatgaagaattggccaac
aagattgccgaaaccatgtcatatggcagcgaagaagaagcgggtagcgaagagccgcgt
cgccgtcgtcgtcgccgtggtcgcggaggtaatcgggatggcgttcgtgattcatcggac
gctgaacaagccgctgaaggcagcgattcagttgaatcagcaccagcacctgagatggct
gaaacagcttccgcacccgctcccgttattgcagcaaccggcttgaatgtctctcaaatg
ggcttgccagctgaacctacagcaatgggttctactgaaaacaatcccgatgagtcgaat
gttcaatcggcagacgtgcaggccgttcagtctgttatcgctgcagtggcacaaactgct
gaagtagagcctgcaaaaaccgaggttcaacaggaggccttggcgaccgagccaacccca
gctgttgaagccgtggtggttgaatcggttcaaagcgcgcctgtggctgaagtaaccttg
gctgctgtagagaaagtagaagccgcgttggtggaaactgcagcacctgctgaaattgct
gagcctgcagccgaagtaaaagcgcccgtaacggcgccagcagcaacagtggcagcaact
gaagccaacgttcaaaagggtgcacctgccccagcgccaaagctggacagaacctcactt
gagcaaatgctgaacagtgccggaatgctttgggttgaaaccgaccacgaaaagtggtct
gttgttcagtcgaaattgagcgaatccacaaagcctgctcgcgttccccgggagcgcaag
cctgttgttcaaatttcaactgaaaacctggtgttgatcgaaaccaagccggagttcaag
agcagcgcgaactga
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