Limnobacter thiooxidans: RGQ30_15930
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Entry
RGQ30_15930 CDS
T09704
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
lto
Limnobacter thiooxidans
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_15930
Enzymes [BR:
lto01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
RGQ30_15930
DNA repair and recombination proteins [BR:
lto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
RGQ30_15930
Prokaryotic type
RGQ30_15930
BRITE hierarchy
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
BET26092
UniProt:
A0AA86JKC9
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Position
complement(1746052..1747764)
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AA seq
570 aa
AA seq
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MNCERMHLHLVWLKKDLRLSDHAPLHLAAEAARSTGGALVLLYCLEPRLIKQPDSAPQHF
EFTRECLQELATALPDYVPLFLAKANMPVALQTLLMSGVEQLSVYSHEETGNWASFERDK
EVMRWCKARGVDWQEFPSNAVVRGLKNRDEWGKLWLETMRKPVLPVPDFTQLPQALQFDF
PDSLHANLQDNGLPCEILNTTPWPTWAKFEHFYSRHQVDKPQRQRGGRLHAQACLAEFLS
ERGMNYRFEMSSPLSAESACSRISPYLAFGVISIREILDMLSRAREQIAQSELAPKAQSQ
WKQSFKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNGMRNAAELSTEEKHRLATWIEG
RTGYPMVDACMRMLKATGWVNFRMRAMLVAFASYQLWLDWRHTAPLLAQEFLDYEPGIHY
PQFQMQSGVTGINTLRIYNPVKQAKDHDPQGVFIRRWVPELTNIPDEWIGEPWNTPLLIQ
HECGCLIGTHYPWPVVNPDTAISQARANITEFRQSKGFVEESRRVYQKHGSRNPNRNGTV
KTRSVKTGQGKLKENADQPVVVDDPQQSLF
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
ttgaattgtgaacgcatgcacctgcaccttgtttggctgaaaaaagacctgcgcttaagc
gaccatgcacctttgcacttggctgcagaggctgcgcgcagcacgggcggcgctttggtg
ttgctgtactgccttgaacccagactgatcaagcagcctgacagtgcgccccagcacttt
gagttcacacgggaatgcctgcaggagttggccactgctttgcccgactatgtgcccctc
tttctggccaaagcaaatatgccggtggcacttcaaaccctcttgatgtcaggtgtcgag
caactctcggtttacagccacgaggaaactggaaattgggccagtttcgagcgcgacaaa
gaggtaatgcgctggtgcaaggccaggggtgtggattggcaggaattccccagcaatgcc
gtggtacgcggtctgaaaaatcgcgatgaatggggtaagctgtggctggaaaccatgcgc
aaaccggtgttgcctgttcctgatttcacgcagttgccgcaggcgctgcaatttgatttt
ccagattccttgcatgccaacttgcaagacaacggcttgccctgtgaaattctcaacacc
acgccgtggcccacgtgggcaaaattcgagcatttctacagccggcaccaagtcgacaag
ccgcagcgccagcgcggtgggcggcttcacgcgcaagcttgccttgccgagttcctcagt
gaacgcggcatgaactaccgctttgaaatgtccagccccttgagcgctgaatccgcatgc
tcgcgtatttcaccgtacctggcgtttggggtgatttccattcgtgaaattctggacatg
ttaagccgggcccgcgagcaaattgcgcaaagcgaacttgcacccaaagcccagtctcag
tggaagcaatcattcaagtcgtttgaaagccgtttgcactggcattgccatttcattcag
aaactggaaagcgagcccgagctggagtttcggtctgcccaccgcggcttgaatggcatg
cgcaatgctgcagaactaagcacagaggaaaaacacaggctggccacctggattgaaggt
cgcacaggctaccccatggtagacgcctgcatgcgcatgctgaaagctacaggctgggtc
aacttccgcatgcgcgccatgctggtggcatttgcttcgtaccagctgtggctcgactgg
cggcacactgcgcccctgttggcacaggagtttctggattacgagcccggcattcactac
ccgcagtttcaaatgcaatcaggggtaactggcatcaacaccctgcgaatttacaacccc
gtgaagcaagccaaagaccatgatccgcaaggcgtgtttattcgccgctgggtgcctgaa
ttgacaaatattccagacgaatggattggcgagccctggaatacacccttgttgattcag
catgaatgcggctgcctgattggcacgcattacccctggcctgttgtgaaccccgacaca
gccatttcacaagcccgtgccaacatcaccgagtttcgtcaaagcaagggctttgtggaa
gaatccaggcgggtgtatcagaagcatggttcgagaaacccgaaccgaaatggcaccgtg
aaaaccagatcggtcaaaacaggtcaaggtaagctgaaggaaaatgcggatcagcctgtg
gtagtggacgacccgcaacaaagcctgttttag
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