KEGG   Limnobacter thiooxidans: RGQ30_16250
Entry
RGQ30_16250       CDS       T09704                                 
Name
(GenBank) AMP-dependent synthetase/ligase
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
lto  Limnobacter thiooxidans
Pathway
lto00061  Fatty acid biosynthesis
lto00071  Fatty acid degradation
lto01100  Metabolic pathways
lto01212  Fatty acid metabolism
lto02024  Quorum sensing
lto04146  Peroxisome
Module
lto_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:lto00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    RGQ30_16250
   00071 Fatty acid degradation
    RGQ30_16250
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    RGQ30_16250
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RGQ30_16250
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:lto01004]
    RGQ30_16250
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lto04147]
    RGQ30_16250
Enzymes [BR:lto01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     RGQ30_16250
Lipid biosynthesis proteins [BR:lto01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   RGQ30_16250
Exosome [BR:lto04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   RGQ30_16250
  Exosomal proteins of breast cancer cells
   RGQ30_16250
SSDB
Motif
Pfam: AMP-binding AMP-binding_C_3
Other DBs
NCBI-ProteinID: BET26124
UniProt: A0AA86J2Z9
LinkDB
Position
1782967..1784646
AA seq 559 aa
MANIATFLFQHEDTPNRVLYRQFIDNEWVDFKAREMIDLARSWQAYFRSIGLQPGDRVAI
CLKNSVHWVAFDQAAVAMGLVSVPLYVDDNASNIAYCIQNSQSRVVLAENDRIARNLLKE
GLTDTRVLSLKSDIDKSADGVDNALQALKAVDKKLESFELIDLEENTLATICYTSGTSGR
PKGVMLSHRNVISNVDSCFQLDIAKPEDTFLSFLPMSHMFERTGGYYLPLRVGAKVIYAR
GINQLPEDLAQQAPTVLFAVPRIFEKFYGRIQSSVKDSRFKRKAFEKLVDVGWRMEQGKG
GIVDHFQLPLLRAKVAQPILERLGGKLRLAVVGGAALDSTIAKSFIAMGLPILHGYGMTE
ACPVISVNRPEGNVPESVGAPLPNVEVKLGENDELLARGPNIMLGYWQNEEATNTVIDKD
GWLHTGDVAEIKDKRIYIRGRIKDIMVLSNGEKFSPQDAEMAIVGDEVFEQIVLIGEGKP
FIGMIAVTANSNEKELIKRANERLQHLPRYIRVRRIITTQDPWTVDNGLLTPTLKVKRVK
VLEAFKDRINDLYAEGMGD
NT seq 1680 nt   +upstreamnt  +downstreamnt
atggcgaacatcgccacttttttgtttcagcatgaggacacccccaatcgtgtcctttac
cgacaattcatcgacaacgagtgggttgacttcaaagcccgggaaatgattgaccttgcc
cgcagctggcaggcttacttccgatcaattggcctgcagcccggggacagagtcgccatt
tgcctgaaaaacagcgtgcactgggttgcctttgaccaagctgcagtggccatgggtttg
gtatccgttcccttatacgtggacgacaatgccagcaacattgcctactgtattcaaaac
tcccaatccagggtagtgctggccgagaacgacaggattgcccgcaacctgttgaaagaa
gggctcaccgatacacgcgtgttatccctgaaatcggatatcgacaaaagcgcagatggc
gttgacaatgcccttcaggcactcaaggccgtggacaagaagcttgagtcattcgagttg
atagatctcgaagaaaacacactggcaaccatttgttacacctctggaacctcgggacgc
cccaaaggggtcatgttgtctcaccggaacgtgatatcaaacgtggacagctgctttcag
ctcgacattgccaaacccgaagacacctttttgtcatttttgcccatgtcgcacatgttt
gaacgcacaggaggctattacctccccctgcgtgtgggcgccaaggtcatttacgcacgc
ggcatcaaccagttacccgaagacctggcccaacaggcccccacggtattgtttgcagtg
ccacgaattttcgagaagttttacgggcgcattcaaagttcggtcaaagactcccggttc
aagcgcaaggcctttgaaaagctggtggatgtgggctggcgcatggaacaaggcaaaggt
ggcatagttgaccacttccagctgcctttgctacgagccaaggttgctcagcccattctg
gagcgattgggcggcaaattgcgactggctgtggtgggcggcgccgcactggacagcaca
attgccaaatcatttattgccatgggcctgcccattcttcatggttatggcatgaccgag
gcctgcccggttatttcagtgaaccgacccgaaggcaatgtgcctgaatctgttggagca
ccgcttcccaatgttgaagtgaagttgggcgagaatgatgagttgttggccaggggcccg
aacatcatgctgggctactggcaaaacgaagaggctacgaacactgtgattgacaaagat
ggctggctgcacacaggtgatgttgcagagatcaaggacaaacgaatttatattcggggt
cggatcaaggacatcatggtgctttccaacggtgaaaagttctcgccccaagatgctgaa
atggccattgttggtgatgaagttttcgagcaaatcgttctgatcggtgaaggcaagccc
ttcattggcatgatcgcggtcactgcaaattccaatgaaaaggaactgatcaaacgagcc
aatgaaagattgcagcacctgccgcgttacattcgcgtgcgcagaatcattaccacccaa
gatccatggacagtcgacaatggtctcctgacaccgaccttgaaagtaaaaagagtcaaa
gtactggaggcgttcaaggacaggatcaacgatctctacgcggaaggcatgggcgattaa

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