Limnobacter thiooxidans: RGQ30_16790
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Entry
RGQ30_16790 CDS
T09704
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lto
Limnobacter thiooxidans
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lto03019
]
RGQ30_16790 (hrpA)
Enzymes [BR:
lto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RGQ30_16790 (hrpA)
Messenger RNA biogenesis [BR:
lto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RGQ30_16790 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
AAA_22
SRP54
ResIII
nSTAND3
AAA_30
T2SSE
AAA_25
LYTB
NACHT
SLFN-g3_helicase
DUF3336
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BET26178
UniProt:
A0AA86IZI6
LinkDB
All DBs
Position
complement(1841981..1845898)
Genome browser
AA seq
1305 aa
AA seq
DB search
MLSKEQILQLPPEIRYPEELPVSQRREEIKQLIAQNQVVIVCGETGSGKTTQLPKMCLEL
GRGLKGQSIVHTQPRRLAATATAKRIAQELNSEIGQWVGFKIRFQDASNANTAVKLVTDG
ILLAESQTDPLFKKYDTIIIDEAHERSLNIDFLLGYLKDVLSKRPDLKLIVTSATIDAER
FSKHFENAKGQPAPVIEVSGRLYPVEVRYKDPNDFDTSRRKNAPVNLADEVDEDAFQAAT
LDAVEELCREGQGDILMFLPGEREIRDMAHFLTKNMRQQLEVLPLFARLTAQEQERIFKP
SGRRRIVLSTNVAETSLTVPGIRYVIDSGVARVKRYSYRNKVEMLQVERISKASANQRAG
RCGRVANGVCIRLYAEADFAGRTDYTDPEILRSSLASVILRMKSLHLTEVEDFPFLQRPM
GRAIADGYQLLSELNALDDAGRLTKIGRALSKLPLDPRIARMLFEASQRACLSEMLVLAA
ALSIQDPRDRPIDAQEAADNAQQQFEDTESDFMSFLKLWSFYTDLKGKSQTNREIKNTLQ
RKFLSANRLREWGEVHQQLTSMVKEQKWHLNDAPANYDQIHLALMSGLLGNIGLKHETDP
VYLGARSIKFSIHPGSNLFKKGGKWIMAAELVETTRLYARNVAKIQPDWIEKVGSHLVKR
NHNNPHWEKGSGQAVAMETGTIYGLPIYSQRRVSLARFNQAEARRLMIHEGLVPGQVKTN
VPFYVHNRKLVEDLEKLEHKARRQDILVDEGLIAQFYDEKLPAGVYNQQTLEVWANQASK
DMLAALYLSKEDLLSKKAGDITTEFYPKKLEMGGLAFDLSYHFEPGSPRDGVTLTIPLML
LNQVNVGRTEWLVPGMLKEKALLLLKSLPQKIRRHCVPVPQFAEKFAEAHFDPKLYEKPL
LERLRDFVASETPARPLLSDFRIETLPPHHFMNFKLLDEHGRQLDMQRSLSALKAEWGRK
AQESFKSSAVVEQVRAQVGTQSSSVGAAAGKVSSKTPSNAASNTAPGAASRAAENNGFTD
QPITDWNFGNLPDMLEIKRGGQTFFGYPALKDMGEHCIIEVYDEEEIARKVHLDGVLRLF
NIALKEPLKYLTKNLIDFQKVAMLYMPLGSSEELQLQWIKLTLMRSALATGLPTTQQEFT
AKTQEARARMNLIAQEIGKILLVILNEHSALSKKLQASAKSFPDCVADIQNQLNWLLPKG
FLLKKPWEQLAHYPRYLKAAQIRLERVRNSIDRDKQLMKDVTDLQLHWIRASSQLKGQED
ESLNQFAWQLQELRVSLFAQELRTPMPVSVKRLQKAWETMARRHQ
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtgttgtcaaaagaacaaattcttcagctcccacccgaaattcgatatcccgaagagttg
ccggtctcccagcgccgtgaggaaatcaagcaactgattgcccaaaatcaggtggttatt
gtgtgcggcgaaacaggctcgggcaaaaccacgcagctacccaaaatgtgcctggaattg
gggcgtggcttgaagggacaaagcattgttcacacgcaaccgcgccggttggcggccacg
gccacggccaagcgcattgcgcaggaactgaattccgagattggtcaatgggtgggtttc
aagatccggtttcaggatgcatccaatgcaaacacagcggtcaagctcgtcaccgatggt
attttgctggctgaaagccagaccgacccgctgttcaagaaatacgacaccatcattatc
gatgaagcgcacgagcgtagcttgaatattgatttcctgttgggctacttgaaggatgta
ctcagcaagcggcctgatttgaaactgattgtgacctcggcgaccattgacgctgaacgg
ttctcaaagcactttgaaaacgcaaaaggccagccagcgcctgtgattgaagtgtccgga
cgtttgtaccccgtggaagtgcgttacaaagaccccaacgatttcgacaccagccgacgt
aaaaacgcaccagtcaatctggcggatgaagtggatgaagatgcctttcaggccgccaca
ctggatgccgtcgaagagttgtgccgcgaagggcagggcgacattttgatgttcctgccc
ggtgagcgtgaaattcgcgacatggcccacttcctgaccaagaacatgcgccagcaactg
gaagtgctgcctctgtttgcaaggctgaccgcccaggaacaggaacgcattttcaaaccc
agcgggcgaaggcggattgtgttgtccaccaacgtggcggaaacatcgctgaccgtgccc
ggtatccgatacgtgatcgattccggtgtggcccgtgtcaaacgctacagctaccgcaac
aaggtggaaatgcttcaggttgagcgcatttccaaggcgtccgccaaccagcgagccggg
cgttgcgggcgggttgccaatggtgtgtgcattcgcctgtatgcggaagctgattttgcg
ggccgcaccgattacaccgatccggaaattctgcgttcctccttggcttctgtgattttg
cggatgaaaagtcttcacctgactgaggtggaggactttccgtttttgcagcgccccatg
gggcgagccattgccgatggctatcaactgttgagcgaattgaatgcgctggatgatgcg
ggcaggctcaccaagattggtcgagccttgtcaaagttgccgcttgacccccgaatagcc
cgcatgctgttcgaagccagccagcgcgcctgtttgagcgagatgctggtgcttgccgct
gcgctttccattcaggacccgcgcgatcgcccgatcgatgcacaggaagccgcagacaac
gcccagcagcaatttgaagacacagaatccgatttcatgtctttcctgaaactgtggagc
ttttataccgatttgaaaggcaaaagccagacaaaccgcgaaatcaagaacacgctgcaa
cgcaaattcctgtcagccaaccgccttcgcgagtggggggaggttcaccagcaactcacc
tccatggtgaaagagcaaaagtggcacctgaatgacgctccggccaattacgatcaaatc
catctggccctgatgtctggcctgttgggcaacatcgggttgaaacacgaaaccgatccg
gtttatctgggtgcgcgaagcatcaagttttccattcatcctgggtccaacctgttcaag
aagggcggcaagtggatcatggcggctgaactggttgaaacaacgcggctgtacgcgcgc
aatgtagccaaaattcagcccgactggattgagaaagtgggcagccacctggtgaaacgc
aaccacaacaacccgcactgggaaaagggttctggccaggcagtggccatggaaaccggc
accatctacggcttgccaatttattcgcaacgccgtgtcagcctggcccgcttcaaccag
gccgaggcccgcaggctaatgattcacgaaggcctggtgccggggcaggtgaaaaccaat
gtgcctttctatgtccacaaccgcaagcttgttgaagaccttgaaaagctggaacacaag
gcacgccgacaagatatcctggtggatgaaggcctgatcgcccagttttacgacgaaaaa
ttgcctgcgggtgtttacaaccagcagactctggaagtgtgggccaatcaggccagcaaa
gacatgctggctgcactgtacctgagcaaggaagatttgctgagcaaaaaggccggcgac
attaccaccgagttttatcccaaaaaactggaaatgggtgggctggccttcgacctgagt
tatcacttcgagccaggcagcccgcgagacggtgtcacattgaccatcccgttgatgcta
ttgaaccaggtgaatgtggggcgcaccgagtggttggtgccgggcatgctgaaagaaaaa
gcacttctgttgcttaaaagtttgccgcagaaaattcgccgccactgcgtgcctgtaccc
cagtttgcagaaaagtttgccgaggcgcatttcgaccccaagctgtacgaaaagcctttg
cttgagcgcctgcgtgacttcgtagccagcgagacaccggcccgcccactgctcagcgat
ttccgcattgagacactgcccccgcatcacttcatgaatttcaagttgctggacgagcac
ggccggcaattggacatgcagcgcagtctgtctgcactcaaggcagagtggggcagaaaa
gcccaggaaagttttaaaagctcagcggtggtggagcaggtgcgggcccaggtgggtact
caatccagttctgtcggtgcggcggctggcaaagtgagcagcaagacgccaagcaacgcg
gcaagtaacaccgccccaggcgctgcgtcaagagcagctgagaacaatggcttcaccgat
caaccgattacagactggaattttggcaacctgcccgacatgcttgaaatcaagcgcggg
gggcaaacattttttggttacccagccctcaaagacatgggcgagcattgcatcatcgaa
gtgtacgatgaggaggaaatcgcccgcaaagtgcatctggatggtgtgcttcgcctgttc
aacattgcattgaaagaaccgctgaaatacctcaccaaaaatttgattgattttcagaaa
gtggccatgttgtacatgcccttggggtcttccgaagagctgcaattgcaatggatcaag
ttgacgctgatgcgcagcgctctggcaactgggttgcccactacgcagcaggagttcaca
gccaagacacaagaggccagggcacgaatgaacttgattgcacaggaaattggcaaaatc
ctgttggttatcctgaatgagcacagcgctctcagcaaaaagctgcaggcctcggccaag
tcattccccgattgtgtggcagacatccaaaaccagctcaactggctgttgcccaaaggt
tttctgctgaaaaaaccctgggaacaattggcccattacccccgctatttgaaagccgct
caaattcgtcttgaacgtgttcgcaactcgattgaccgagacaagcaattgatgaaagat
gtcacggatcttcaattacactggatccgtgccagttcgcagctgaagggacaggaagat
gaaagcctgaaccagtttgcctggcagttgcaggaactgcgggtttccttgtttgcccaa
gagcttcgaacacccatgccagtgtctgtgaaacgtttgcaaaaagcttgggaaaccatg
gctcgccgtcaccaatag
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