Limnobacter thiooxidans: RGQ30_19040
Help
Entry
RGQ30_19040 CDS
T09704
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
lto
Limnobacter thiooxidans
Pathway
lto02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RGQ30_19040
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lto02000
]
RGQ30_19040
02044 Secretion system [BR:
lto02044
]
RGQ30_19040
Transporters [BR:
lto02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
RGQ30_19040
Secretion system [BR:
lto02044
]
Type I secretion system
Adhesin protein transporter
RGQ30_19040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
AAA_29
AAA_22
AAA_30
Rv0078B
Zeta_toxin
AAA_16
AAA_23
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
BET26403
UniProt:
A0AA86IZV1
LinkDB
All DBs
Position
complement(2114282..2116207)
Genome browser
AA seq
641 aa
AA seq
DB search
MSVKYLFKERLEALWNFGLKSEKSGDSSTESENLDVNNSKTVESVIRGALPLLKRAALLS
IFVNLVALFPAIFSLQVYDRVIYRSGLNTLTALLIGMGIILAADLILRSFRARVLRVAAV
KIDGQIASRLMNKILSIPLRQLEARSTASWYSLFKDVDTVRVVWSGAVAMTILDLPFAIL
AIGLIATIALPVLPVVLIGLACLAALSWYSAGEFRKRRVEEFSRARRRDEVLAEVCRGRE
AIKSLVQDESAKRAWVSSYNSWVQESFQKNGEMEDQRELSVSIMLCVNVAITAVGAFAVI
NQWMTVGGLIASNMLAAKAIGPLAALTGHWRSIAHSREAADRLNKVFGSDEEKQHTGLSL
PMPSGALRLENVSYQHVGAQKEVVKSVSAQIGPRGIYGLAGDNGAGKSTLLKLLRGLYEP
QSGRVLLDEYDLSQFSRQELAKWIGFLPQTSQLFEGTIVENLRRSNPDASDEQILLAAKR
SGAHEFIAKMPDGYMTQVGEGGNRLSGGQRRRVAITQAFLSDAPVLLLDEPTNDLDFAAE
THLMAVFKSLATVKTIIMVTHSVRLMSICDKIIYLDKASKLHLGATPEMLKLLYGISVPK
AVPAAPKAAAQVGNEAIKGTLGNDVAEVETNSDAGGKAAQA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttaaatatttgtttaaagaaaggctggaggcactctggaatttcggcttgaag
tctgaaaagtcaggtgattcatcgactgagtctgaaaacttggacgtcaataattcgaag
acagtggaaagcgtcattcggggtgctttgcccttgctcaagcgtgcggcccttttgtcc
atcttcgtgaacctggtggccttgtttccagccatcttttccctgcaggtttatgatcgg
gtgatttatcgctctggtttgaataccttgacagccttgctgattggcatgggcattatt
ttggcagcagacctgatacttcgctcattccgggcccgggtattgcgcgtggccgctgta
aagattgacggccagatcgccagccgactgatgaacaaaatcctgtctatcccccttcga
cagcttgaagcgcgctccactgcatcgtggtattcgctgtttaaagacgtcgatactgtt
cgcgtggtctggagtggtgctgttgcaatgaccattctggatttgccttttgcaattctc
gcaattggcttgatcgcgaccatcgcgttgccagtattgccggtcgtgctgatcgggttg
gcctgtctggcggcgctgtcctggtacagcgccggcgaattccgcaagcgccgtgttgaa
gagttttctcgagcccgtcgtcgagacgaagtactggccgaagtttgccgaggccgtgaa
gccataaaaagcttggtgcaagatgagtcggcgaagcgggcttgggtgtcgagttacaac
tcgtgggtccaggagtctttccagaaaaacggggagatggaggaccagcgggaactgtct
gtttccatcatgttgtgcgtgaacgtggccatcacggctgtgggtgcgtttgcagtgatc
aatcaatggatgactgtgggtggtttgattgcttcaaacatgttggctgccaaggcgatt
gggccattggctgcgctgacaggccactggcgttcaattgcgcattcccgcgaagcggct
gatcgcctgaataaagtgtttggctcggacgaagagaaacagcacacggggctgagcttg
cccatgccttcgggtgcgctgcggttggaaaacgtgagttaccagcacgtgggtgcccaa
aaagaagtggtaaaaagcgtgtccgctcaaattggtccacgcggtatttatggcctggcc
ggagacaatggtgcaggcaagtccactttgctgaagttgctgcggggcctctacgagcca
caatcgggtagggtgttgctggacgaatacgacctgtcgcagttttcacgccaggagttg
gcaaaatggatcggatttttgccgcaaacgtcgcaactgttcgaaggcaccattgtagaa
aacctgcgtcgttcaaaccccgatgccagcgatgagcaaattttgctggctgccaagcgg
tcgggagcacatgaattcattgcaaaaatgcccgatggctacatgacccaggttggtgaa
ggtggcaatcgtttgtcaggtggccaacgtcgccgggttgcgattacccaggctttttta
tccgatgcccctgtattgttgctggacgaacccaccaacgacctggattttgccgctgaa
acccacttgatggctgtattcaaaagcttggctacggtgaaaaccatcatcatggtgacg
cactcggttcgcttgatgtcgatttgcgacaagattatttatctggacaaagcgtccaag
ctgcatttgggtgctacaccagaaatgctcaagttactgtatggcatttctgtgcccaag
gctgttcctgccgcacccaaagcggctgcgcaggtgggaaatgaggccatcaagggaacg
cttggcaatgatgttgctgaagttgaaaccaattcggacgctggcggaaaggctgcgcag
gcctga
DBGET
integrated database retrieval system
