KEGG   Limnobacter thiooxidans: RGQ30_27290
Entry
RGQ30_27290       CDS       T09704                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
lto  Limnobacter thiooxidans
Brite
KEGG Orthology (KO) [BR:lto00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lto03400]
    RGQ30_27290
Enzymes [BR:lto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RGQ30_27290
    5.6.2.6  RNA 3'-5' helicase
     RGQ30_27290
DNA repair and recombination proteins [BR:lto03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    RGQ30_27290
SSDB
Motif
Pfam: WH_Lhr DEAD_assoc DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-ProteinID: BET27228
UniProt: A0AA86J1E1
LinkDB
Position
complement(3026316..3028994)
AA seq 892 aa
MSDFRGLPPGPNVGTQLKALRRKQKKAAATAANVATDVATAEQAGTENVGPVVAPFPVTS
TDLSPLSALTIERIQDWFAAQDWSPFHYQQEVWNAMQGGRSGLLHATTGAGKTLAVWLGA
LLAVARLPKQRGAATRVMWITPMRALAADSAKALQKSVAALAGDCEVALQTGDTDSATRA
AILRKPPFALVTTPESLTLMFTRASSQPNLSKLQVLVVDEWHELIGNKRGVQLQLAIARL
AQMNPGLQVWGLSATLGNLPLAMDVLLHPVTAKKKPVLVQGKLPKQLMIDSLIPDTFERF
PWGGHLGLTQLEFVAREIDQSASTLVFTNTRSQAEIWYQALLEARPEYAGLLALHHGSLD
KSVRDWVESGLKTGLLKAVVCTSSLDLGVDFLPVERVIQIGSPKGVARLLQRAGRSGHAP
GRPSRITVVPTNALELLEAAAARHAAERRQIESRFSPDCPLDVLVQHLVTVAMGTGFKPD
DLYVEVRATYAYRNLTRAQFDWAVAFVEKGGESLAAYPDYQRVAMDDAGVYRVPRRDIAR
RHAMSVGTIVSDSAMHVAWMTGGRLGTIEEGFIARLKAGDCFSFAGRVLELVKVRDMTAY
VRKANRKKATVPQWQGGKMPLSSELAHASLHMLEVAHQALYKGKKPALPELHALEGLLGL
QMRWSALPSTTNLLIEELHSKEGHHLFVYPFEGRTVHIGLASLLAWRASRHKPGTFSIAM
NDYGFELLSAEPVNWAEWIPARLADSHLFSTDNLFQDVLDCLNASELAQRRFREIARISG
LVFQGYPGAGKSTKQLQASSGLFFEVFKKHDQHNLLLGQAQREALEQELELKRMEQALLS
IQTKTLVFKQIERPTPFAFPLLIERLREVVSTEKLSDRVARMVAELEKAAQA
NT seq 2679 nt   +upstreamnt  +downstreamnt
atgtcggattttcggggacttccacccggtcccaatgtgggaacccaactgaaagcactg
cgccgcaaacaaaaaaaggcggccgcgacggctgccaacgttgccacggatgttgccacc
gctgagcaagcaggcacagagaatgttggtcctgttgttgcccctttcccggtaacctcc
acagacctatcacccctttcagccttgactatcgaaagaatccaagactggtttgcagca
caagactggtcgccattccactatcagcaggaagtgtggaatgccatgcaaggtggccga
agtggtttgttgcatgccaccacgggtgctggaaaaaccctcgctgtgtggctgggcgcc
ttgctggcagttgcgcgcttgcccaagcaacgcggagccgccacacgcgtgatgtggatt
acacccatgcgagccctggctgctgacagcgccaaggccttgcaaaaatcagttgcagca
ctggccggcgactgcgaggtggcacttcaaaccggcgacaccgattccgcaacgcgggct
gccatattgcgcaaacctccatttgctttggtgactacccccgaaagcctgaccctgatg
ttcacgcgcgccagcagccagccaaacttgagcaagttgcaagtactggtggtggatgaa
tggcatgagctgatcggcaacaaacgaggcgtgcaattgcagttggccattgcccggctt
gcccaaatgaatcctggtttgcaggtgtggggcttgagtgccactttgggcaatttgccc
ttggcgatggatgtgctgctgcacccggtgacagcgaagaagaagccagtactggttcaa
ggcaaactacccaagcaattgatgatcgacagcttgatccccgatacgtttgagcgtttt
ccctggggcggtcacctgggtttgacccaacttgaatttgtggcccgagaaatcgaccag
tcggcctccacgctggtgtttaccaacacgcggtcacaggcggaaatctggtatcaagcc
ctgttggaagcacgcccggaatatgcggggctgttggccttgcaccatggttcactggac
aagtcagttcgtgactgggtcgagtctggtttgaaaaccggcctgctgaaagcggtggtg
tgtacctcgtcgcttgatttgggagttgattttctgccggttgaaagggtgattcaaatc
ggttcgcccaagggtgtggcgcgtttgcttcaacgtgcagggcgttctggccacgcacct
ggaaggccttcacgaattaccgtggtgcccaccaatgcactggaattactggaggctgcc
gccgcacgccacgcagccgagcgtcggcaaattgaatcgcgtttcagcccggattgccct
ttggatgtgctggttcagcacctggtcaccgtggcgatgggtacgggtttcaaacccgat
gatttgtatgttgaagttcgcgccacctatgcctacaggaatctgacacgggcgcagttt
gactgggcggtggccttcgtggagaagggcggtgaaagtcttgcagcctatcccgactac
cagcgtgtggccatggacgatgccggtgtgtaccgcgtgccgcgtcgcgacattgcacgt
cggcacgccatgtcggtgggcaccatcgtgtcggattcagccatgcacgtggcctggatg
actggtggccgcctgggtacgattgaagaaggttttattgcccggctgaaggcgggcgat
tgcttcagttttgcaggccgggtacttgagttggtaaaagtgcgcgacatgaccgcgtat
gtgcgaaaagccaaccgcaaaaaagccacggtgccccaatggcagggtggaaaaatgccc
ttgagtagtgaattggcacacgcttcgctgcacatgcttgaggtggcgcatcaagcccta
tacaaaggcaaaaagccggcattgcctgagctgcatgcacttgagggtttgctgggtttg
caaatgcgctggagcgccctgcccagcaccacgaatttgctgatcgaggaactgcacagc
aaggaaggtcaccacctgtttgtgtaccctttcgaagggcggacggtccacattgggctt
gccagcctgctggcctggcgggcttcgcgccacaagccggggaccttttcaatcgccatg
aacgattatggttttgagttgctaagcgccgaacctgtgaactgggctgagtggattccc
gcccgccttgcagattcccaccttttttccacagacaacctgtttcaggacgtgctggac
tgcctgaatgcgtccgagttggctcagcggcgttttcgggaaatcgcacgcatctcgggg
ctcgtgtttcaaggatatccgggtgccgggaaaagcaccaagcagctgcaggcctccagt
ggtttgttttttgaggtgttcaaaaagcatgatcaacacaacctgctgctggggcaggcc
cagcgcgaagcgctggaacaggaactggaattgaaacgcatggaacaggcgctgctgtcc
atccaaaccaaaaccctcgtgttcaagcaaattgaaaggccgacaccctttgcttttccc
ttgttgatcgagcggctgcgcgaggtggtcagcacagaaaaattgagtgaccgggtcgcc
cgcatggttgctgagctggaaaaggcggcgcaagcgtga

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