Limnobacter thiooxidans: RGQ30_28060
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Entry
RGQ30_28060 CDS
T09704
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGQ30_28060 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lto03021
]
RGQ30_28060 (rpoA)
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_28060 (rpoA)
Enzymes [BR:
lto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGQ30_28060 (rpoA)
Transcription machinery [BR:
lto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGQ30_28060 (rpoA)
DNA repair and recombination proteins [BR:
lto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGQ30_28060 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
BET27305
UniProt:
A0AA86J8X8
LinkDB
All DBs
Position
complement(3122365..3123345)
Genome browser
AA seq
326 aa
AA seq
DB search
MFNASLLKPRIVEVETVGPNSAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVSIA
GVVHEYSTLDGVQEDVVDLLLNLKGIVFKLESRDVVTVTLKRDGEGVVTAGDIELPHDVE
IINPDHVIAHLSQGGKLDMQIKVEKGRGYVPGSVRRFPDEPSKAIGRIVLDASFSPVKRV
SYAVESARVEQRTDLDRLVMSIETNGVLSPEESIRLAARILVEQLSVFAALENTAEPEVS
QRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI
KEVLAARGLTLGMKLENWPPAGLDKP
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgccagtttgctgaaaccgcgcattgttgaagtcgagacagtcggccccaac
agcgcaaaagttgtgatggaaccgtttgagcgtggctacggccacactttgggcaacgcg
ttgcgtcgcgtgttgctgtcctccatgattggatacgcacctacagaggtgtcaatcgct
ggagtggttcacgagtattcgacattggatggtgtacaggaagacgttgttgacctgttg
ttgaacctgaaagggattgttttcaagcttgagtcacgcgatgtagtgactgtgaccttg
aagcgtgatggtgaaggcgttgtgacggctggtgatattgagctgccccatgatgtcgaa
atcatcaatcctgaccacgtgattgctcatctttcacagggtggaaagctggacatgcag
atcaaggtcgagaaaggccgtggttatgtgcctggttccgttcgtcgttttcctgatgaa
ccaagcaaggccattggtcgtatcgttctggatgcttctttcagcccggtaaagcgcgtt
tcctacgcagtagagagcgcacgtgttgagcagcgtacagacttggatcgcttggtgatg
tcaatcgaaaccaacggtgtcttgtcgcccgaggaatccattcgtttggcagcacgcatt
ttggttgagcagttgtcagtgtttgccgccttggaaaacacggcagagcctgaggtttct
cagcgtgcgccgcaggtagatcctatcttgctgcgtccggttgatgacctggaactgact
gttcgctcggcgaattgcttgaaggcagagaatatttactacattggcgacttgattcag
cgcacagaaaatgagttgctgaagacccctaacctgggtcgcaagtcactgaatgagatc
aaggaggtgttggccgcacgcggtttgacactgggtatgaaattggaaaactggccacca
gccggtctcgataagccctga
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