KEGG   Limnobacter thiooxidans: RGQ30_29500
Entry
RGQ30_29500       CDS       T09704                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
lto  Limnobacter thiooxidans
Pathway
lto03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:lto00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    RGQ30_29500 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:lto02044]
    RGQ30_29500 (tssM)
Secretion system [BR:lto02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   RGQ30_29500 (tssM)
SSDB
Motif
Pfam: IcmF-related IcmF-related_N IcmF_C IcmF_helical AAA_33 RecJ_C Regnase_1_C
Other DBs
NCBI-ProteinID: BET27449
UniProt: A0AA86M990
LinkDB
Position
3267824..3271291
AA seq 1155 aa
MLLRFVFCLLAFFGFLALVWFVGPIVSIGEYKPLEGLWPRFALIALMALLIFGPLGWRWW
TLRKAEQALKVGLTRQDEQARVQSAKLQEIFTEAVNTLKKHQSRKAWYQSKPGLYELPWY
VMIGPPGSGKTTALHNAGLRFPLQENLGKDPIKGVGGTRNCDWWFTDQAVLIDTAGRFTT
QDSDQATDAAAWNSFLGLLKKHRPRQPVNGVLLTLSIHELLDSPAQRRETAGKIALRLQE
MIRILGMCPPVYVLVTKLDLLSGFKETFGRLSEQERAQAWGVNFEHPNLLDITLKDTLPH
ALNEMIARLSEQLNVRLDREELEHRRIKLFEFPLAMAQLKPAIEDVLLQALQCGSPFEKP
ITLRGVYFSSGTQDGNVFDRILSGMGTPSRHADTNTAGQGKSFFIQAMLSKVVFAEQHLA
AYVRRKALLSTVSYFATLGLALLVFGLLCAGWWLSHTNNSNAMAQTLDRSSVMKAQAAAL
PTEAQASLQALFRALDTLQGVVTQSPDELTYHLGLNQDVKLQQAEQLAYRRALSEALMPH
VAKRLEDRLRASLNQDMELAYESLKAYVMIHSPQYFDAQALASWVVFDWKQNVFSAYGPD
LKTRAVAHLEAAIALGAPTGLPAIDLELVNTARQAIGVQSLEQRLYKRMLRFFKPGSIPD
FNLIQTVGVSAAAVFTRPSGQSLNQGVDAFFTREAYVSHFLPSLPAEAARLNKEAGWVMG
DSHAALNDEPHNLLQRTRQLYIEDYINTWDSYLKDVEIQRPTQFDQAVNLARVLASPQSP
LKKFLEGVSGNTRLAGQSTQLASKAESLANQKASQSLSSNAALLADSDFKPVDIDVPLEQ
QVDDYFSDINGLFEGNPPSYAQVSTLLNDLYAQLAAVASAKKSKTAPPPPAAMDALQVGA
GLLPEPVRAIVGQLAGQGSAQGRAAERANLTADLRPLQEVCQRTVANRYPIHAGSGLDVL
TDDFARFFGPSGLMDQFFSSRLANLVDTGTGSWTLKPLSDGSRAANNPSLIQFQRAARIR
DVFFSGNKASPGFEVEMRLVNSSNPDDVFYLENNGELKMFSRQFQPNHRIQWGGQSPSAT
LRVRASEGSYKTYSGPWALFRLFDASQIQNTERPEKFKAKFTLDGKQFDFEILANSAFNP
LRLHELRQFRCPGNL
NT seq 3468 nt   +upstreamnt  +downstreamnt
atgcttttaagatttgtattctgcctgctggcatttttcgggtttcttgcgcttgtctgg
tttgtcggtcccatcgtgtccattggtgaatacaaaccactggaggggctttggccgcgc
tttgcactgattgctttgatggcgctgctgatcttcggcccactgggctggcgttggtgg
accttgaggaaagccgaacaggcgctgaaagtgggtttgactcgacaggatgaacaagcc
cgcgttcagtctgcgaagcttcaggaaatctttaccgaagcggtcaacacgctaaaaaag
caccaatcgcgcaaggcctggtatcagagcaaacccggcctgtacgagctgccctggtac
gtgatgatcggcccgcccggaagtggaaaaacaactgcgctccataatgctggcttgcga
tttcccttgcaggagaacctgggcaaagaccctatcaagggagttggtggaacacggaac
tgcgactggtggttcactgaccaggctgtgctgattgacacggctgggcgcttcactacc
caggactccgaccaggccactgacgcagcagcatggaattcgttcctgggcttacttaaa
aaacaccgccccaggcaacccgttaatggggttctgttgacgctcagtattcacgagctg
ctagattcgccggcacagagaagagaaacagcgggaaaaattgcgctgcgtctgcaggaa
atgattcgaatactgggcatgtgcccgcccgtctatgtactggtgacaaaactggatcta
ttgtcaggcttcaaggaaacgtttggccgcttgagtgaacaggaacgtgctcaagcctgg
ggggtgaattttgaacacccaaacctgcttgacatcaccctgaaagacacccttccacac
gcactgaacgaaatgattgcccgcctgagtgagcagttgaatgtccgcctggaccgagag
gagcttgaacatcgcaggatcaaactgtttgaatttccgctggccatggcgcagttgaaa
ccggcgattgaagacgttttgctacaggcacttcaatgcggaagcccctttgagaagccc
attacgctgcgtggggtttacttcagcagcgggactcaggatggcaatgtgtttgaccga
attttatcgggcatgggtacacccagtcgccacgcggataccaacacggctggacagggc
aaaagttttttcattcaagccatgttgtcgaaagtggtattcgcagaacaacacctggct
gcctacgtgagacgcaaggctctgctgtcaacagtgagctatttcgcaaccctgggtctt
gcgctgttggtgttcggcttgctctgtgcaggctggtggcttagccacaccaacaacagt
aacgccatggcccaaacgcttgatcggagtagcgtcatgaaagcgcaggctgctgcactg
cccacagaggcacaagcttcgctacaagccctgttcagggcattggacacccttcagggt
gtggtcacccaaagcccggacgaattgacctaccacttgggtttgaatcaggacgtaaaa
ctgcaacaggccgagcaactggcttaccggcgagccttgtcagaagcattgatgccccat
gtggccaaacgccttgaagaccggcttagagcgtcattgaaccaggacatggaactggcc
tatgaatcattgaaagcctacgtgatgatccattcgccacagtatttcgatgcgcaagcg
ctagccagctgggtggtttttgactggaaacagaatgtgttttctgcttatggacctgac
ttgaaaacccgtgcggtggcgcatctggaagccgccattgcgctgggcgcacccaccggg
ttgcctgcaattgaccttgaactggtcaataccgcccggcaggccattggcgtgcaatca
ctggagcaacgtctgtacaaacgcatgctgcggtttttcaaacccggttcaatacccgat
ttcaatctgattcaaaccgtgggggtcagtgcggcggctgtgttcacccgacccagtggc
caatccctgaaccagggtgtcgatgcttttttcacgcgcgaagcgtatgtcagtcatttc
ctgcccagcctgcctgccgaagcggcacgcttgaacaaggaggctggctgggtcatgggc
gacagccatgcagccctcaacgacgaaccccacaacctgcttcaacgaacacgccagctt
tacatcgaggactacatcaatacatgggacagctatttgaaagatgtggaaattcagcgc
cccactcagtttgaccaagcggttaatctggcccgcgtgctggcttcaccgcaatcgccc
ttgaagaagtttcttgagggggtgtctgggaacaccaggctggcaggtcaatcgacacag
cttgcgtccaaagcggagtctttggccaatcaaaaagcttcgcaaagcctgtcaagcaac
gctgccttgctggcggattcagacttcaaacccgtggatatcgacgtgccactggagcag
caggttgatgattatttcagcgacatcaatggtctgttcgaaggcaacccaccaagctat
gcgcaagtgtcgacgttgctgaatgacctgtatgcacagcttgccgctgtggccagcgcc
aaaaaaagcaaaacagcgccaccgccgccagcagccatggacgccctgcaggtgggtgct
ggtttgctgcctgaaccggtacgcgccattgtcgggcagttggcaggccaaggcagcgca
caaggcagagccgcagaacgggccaacctgacggccgacctgcgaccactgcaagaggtt
tgtcagcgcaccgtggcgaatcgttaccccatccatgccgggtcaggtctggatgtgctg
accgacgatttcgcacgctttttcggcccatcgggcttgatggaccagttcttttccagc
cgactggccaacctggtggacacaggcactggcagttggaccctgaaaccactcagcgat
ggctcccgagctgcaaacaatccgtccctgatccagtttcaaagggctgcccgaattcgg
gatgtgttcttttcaggaaacaaggcttcgccaggctttgaagtggaaatgcgcctggtg
aattcgagcaatccggacgatgtgttctacctggaaaacaacggcgaactaaaaatgttt
tcacgacagtttcaacccaatcatcgaattcaatggggtgggcaatccccatccgccaca
cttcgtgtacgagcttcggaaggctcttacaaaacctattcgggcccttgggcgcttttc
aggctgttcgacgcgagccagattcaaaacaccgagcgccctgaaaaattcaaggcgaaa
ttcacactcgatggcaagcagtttgattttgaaatactggcgaattcggcttttaacccc
ttgcgtcttcatgagctacgtcagtttcgttgcccgggcaatctatga

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