Limnobacter thiooxidans: RGQ30_30940
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Entry
RGQ30_30940 CDS
T09704
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
lto
Limnobacter thiooxidans
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lto03032
]
RGQ30_30940
03036 Chromosome and associated proteins [BR:
lto03036
]
RGQ30_30940
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_30940
DNA replication proteins [BR:
lto03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RGQ30_30940
Chromosome and associated proteins [BR:
lto03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RGQ30_30940
DNA repair and recombination proteins [BR:
lto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RGQ30_30940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-DNA_bdg
Arteri_nsp7a
PT-TG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
BET27593
UniProt:
A0AA86J2Y2
LinkDB
All DBs
Position
3420195..3420491
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AA seq
98 aa
AA seq
DB search
MNKSELIDALAAKADVSKAVAGKLVDAFTETVTKAIVDGDSVVLVGFGSFSSGERAARTG
RNPRTGEEISIAAARTAKFTPGKALKDAVNAKKAKKKK
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgaataagtctgaattgattgacgcgctagccgcaaaagccgatgtatccaaagccgtt
gctggcaagttggtagatgccttcactgaaacagtgacaaaagccatcgttgatggtgat
tccgttgttttggttggttttggttctttcagctccggtgagcgcgctgcacgcactggt
cgcaatccacgcactggtgaagaaatcagcattgctgctgcacgtacagccaagttcaca
ccaggcaaggcattgaaagacgcagtaaacgccaagaaagccaagaaaaagaagtaa
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