Limnobacter thiooxidans: RGQ30_31660
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Entry
RGQ30_31660 CDS
T09704
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RGQ30_31660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_31660
Enzymes [BR:
lto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGQ30_31660
DNA repair and recombination proteins [BR:
lto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RGQ30_31660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_C
DEAD
Helicase_C
Zn_ribbon_PriA
ResIII
PriA_3primeBD
AAA_30
Zn_ribbon_6
ATPase_2
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
BET27665
UniProt:
A0AA86J9G6
LinkDB
All DBs
Position
complement(3508875..3510767)
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AA seq
630 aa
AA seq
DB search
MADNIKAVHTVLDQGECLTTEWQALIEFAARYYHHPLGMIALEALPKALRVLNARGEEPV
MVAKSREHAFKLLAERSDPVAASKAGKTRSDKADKPVLNPEQGEAVAQFSNAQGFQPFLL
YGVTGSGKTEVYLHTVEERLKRGEQVLVLLPEINLTPAAQALYKERLAPHRVVVMHSNLA
ELTRTKAWFEAATGAADVIIATRLGVLTPLPRLGLIVVDEEHDPSYKQQDGMRYHARDLA
LMLAKQREVPIVLGSATPALESWLKADQGAYKRLTLKNRAVLGASLPKVELINTANFPAK
EGLSEPAMQALVQNFEAGKQSIVFLNRRGYAPQMVCNACGWVANCDHCTAHMVWHKNERM
LRCHHCGAGQKVPTHCPTCGNQDLTGFGRGTQRIEETLGGLLPTANILRIDADSTRNKGQ
MEALLQQAHSGEADVLVGTQMIAKGHDFANVTLVLALNVDASLYSHAYRAPERLFAQLMQ
VAGRAGRRAGDARMVVQTRYPQHPLFDALKAHDYETFAHHEMQARKDARMPPFSHQATIR
ADHKKLANCLQFLSIARELGEPLVDADNPVFMCDPVPLTVVRVGGIERAQMLIESESRPA
LHRFLTQWLVQLHELPGGVRWFLEVDPVDL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaacatcaaggccgtgcatacagtgctggaccaaggtgagtgcctgaccacc
gaatggcaggcgctgattgaattcgctgctaggtattaccaccaccctttgggcatgatt
gctcttgaggccttgcccaaggcgcttcgggtattgaatgcgcgcggggaagagcccgtg
atggtggcgaagtcgcgtgagcatgcattcaagctgctggccgagcgcagtgaccccgtt
gccgcaagcaaagccggcaaaaccaggtccgacaaagcagacaagccagtgctgaaccct
gagcaaggggaggcggttgcacagttttccaatgcacagggttttcagcctttcttgttg
tatggcgtaacaggcagtggcaaaaccgaagtgtatttgcacacggtcgaagaacgcctg
aagcgcggggaacaggtgctggtgttgctgccggaaatcaatttgaccccggctgcccag
gccctgtacaaggagcgcctggcaccccaccgcgtggtggtgatgcacagcaacctggcc
gagttgacccgaaccaaggcctggttcgaagcggccacgggtgcagctgatgtgatcatt
gccacccggcttggcgtgttgaccccgctgcctcgtcttggtttgatcgtggtggacgag
gaacacgacccttcctacaaacagcaggatggcatgcgctaccatgcccgcgatttggct
ctgatgctggccaaacagcgcgaggtgcccattgtgttgggttctgcgacccctgccttg
gaaagctggttgaaagcggaccagggggcttacaagcgcctcaccttgaagaaccgggcg
gtgctgggtgccagcctgcccaaggtggaattgatcaacacagccaacttcccggccaaa
gagggtttgagcgagcctgccatgcaggcgcttgtacaaaactttgaagccggcaagcaa
agcattgtgtttttgaaccgccggggctacgccccgcaaatggtgtgcaatgcctgtggt
tgggtggccaattgcgaccactgcaccgcccacatggtgtggcacaagaatgaacgcatg
ctgcgctgccaccactgtggtgcaggtcaaaaggtgcccacgcattgccccacctgcggc
aatcaggacctgaccggttttgggcgtggaacccagcgcattgaagaaaccctgggcggt
ttgctgcccacagccaatatcttgcgcattgatgctgacagcacccgcaacaaggggcag
atggaggcgttgctgcaacaggctcacagtggtgaagcggatgtgctggtgggcacccag
atgattgccaagggacatgattttgcaaatgtcacgctggttctggccttgaatgtggat
gcgtcgctgtattcgcatgcctatcgcgcccctgaacgcctgtttgcccagttgatgcag
gtggcaggacgggctgggcgcagggcaggtgacgcccgcatggtggtgcaaacccgctac
ccgcagcatccgctttttgatgccttgaaggcgcacgattacgaaacctttgcccatcac
gaaatgcaggcccgcaaagacgcccgcatgcccccgttttcacaccaggccaccattcgt
gcggatcacaagaagctggccaattgcctgcagtttttaagcattgctcgggaattgggt
gaacccttggtggatgcagacaacccggtgttcatgtgtgacccggtgccgctgacggtg
gtgcgggtgggtggtattgagcgcgctcaaatgctgatcgaaagtgaatcacgacccgcc
ctgcatcggttcctcacccagtggctggtgcagttgcacgagttacctggtggcgttcgc
tggtttttggaagtggacccagtggatctctaa
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