Leuresthes tenuis (California grunion): 140270056
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Entry
140270056 CDS
T11698
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140270056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ltu03021
]
140270056
03019 Messenger RNA biogenesis [BR:
ltu03019
]
140270056
Transcription machinery [BR:
ltu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140270056
Messenger RNA biogenesis [BR:
ltu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140270056
U7-dependent histone pre-mRNA processing factors
140270056
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
140270056
NCBI-ProteinID:
XP_072221229
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKVDIFVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHASKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCIQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQTQAIPFTGPYSLLVCHLRSL
TGDVEELDGTEKSTLKIFKNITLIHEVGMVLLEWVTNPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSAIMDMEVFQSRIEVMLQDMFGVECVDFSDGKTISVTVDGKTVNICLETRSVC
YEDESTDDDSLKEMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgtaaagtagatatcttcgtaccagccgaagaaagcgaccagctccta
attcgtcctcttggtgctggtcaggaggttgggaggtcatgcattatcctggagttcaaa
gggaggaaaataatgctggactgtggcattcaccctggcttggagggaatggatgctctc
ccctacatagacttgatcgacccagctgaaatagacctcctgctcatcagccatttccac
ttggatcactgcggagctctgccctggtttctccaaaagacaagcttcaaagggaggacc
ttcatgacccacgccagtaaagctatttatcgctggctgctgtcagactacgtcaaagtc
agcaacatctccgcagacgacatgctctacactgagactgacctggaggagagcatggac
aagattgagaccatcaacttccacgaggtcaaggaggtggccggaatcaagttttggtgc
taccacgccggtcatgtgctgggagcagccatgttcatgatcgaaatagctggagtcaaa
ctgctgtacactggagacttctccagacaagaagacaggcatctaatggcagctgagatc
ccaagtgtcaaacccgacatcctaatcatagagtcgacctacggcactcacatccatgaa
aagagggaggagcgtgaggctcggttttgtaacacggtgcatgacatcgtcaacagggag
ggccgctgtttaattcctgtgtttgcgttgggacgtgcccaggaattgttgcttatcttg
gatgagtactggcagaaccacccagagctccacgacatccccatttattacgcctcatcc
ctggccaagaagtgcatggccgtgtaccagacttatgtcaatgcgatgaacgacaagatc
cgcaaagccataaacatcaataacccttttgttttcaagcatatcagcaatttaaagagc
atggatcactttgacgacatcggccccagtgtggtgatggcgtctccgggtatgatgcag
agcggactttccagagagctctttgagagctggtgcactgataagaggaacggagttatc
atcgctggctactgtgtggagggcacgctggctaagcacatcatgtctgagcccgaggag
atcaccaccatgtccggccagaagctgcagctgaagatgtcggtggactacatctccttc
tctgctcacaccgactaccagcagaccagcgagttcatcagggctctcaaaccaccacat
gtgatcctggtccacggggagcagaatgagatggctcgtctgaaggctgcgctgatcaga
gagtacgaggacaacgaccaggttcacatcgaagtccacaacccgcgcaacacggaggcc
gtcacgctcaacttcagaggagagaagctggccaaggtgatgggttcccttgccgataag
aagtgcattcagggtcagagggtgtcaggcatactagtgaagaagaacttcaactaccac
atcctcaatccgtcggatctatcaacgtacacagagctggccatgagcacggtgaaacaa
acccaggccattcccttcactgggccgtactcgctgctcgtctgccacctgaggagcctc
accggggatgtcgaagagctggacggaactgagaagagcactttgaagatctttaaaaac
atcactctgatccacgaggtcggcatggtgctgctggagtgggtcactaatcctctcaat
gacatgtatgctgacgccgtcaccactgtggttctggaggtccaatcaaacccaaaagct
caaaaagtcatggagacccagagtgccattatggacatggaggtgttccaaagccgaata
gaggtcatgttgcaggacatgtttggagtggaatgcgtggacttcagtgatggtaaaacc
atctctgtgacagtagatgggaagacggttaacatctgtttggaaacgcggtcggtgtgc
tacgaggatgaaagcacagacgacgactccctgaaggagatggtggaactggcggtgcag
agactctatgatgccctgaacccagtgatctaa
DBGET
integrated database retrieval system
