Leuresthes tenuis (California grunion): 140272288
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Entry
140272288 CDS
T11698
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu04510
Focal adhesion
ltu04512
ECM-receptor interaction
ltu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140272288 (col2a1a)
04518 Integrin signaling
140272288 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140272288 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ltu00536
]
140272288 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ltu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140272288 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
140272288
NCBI-ProteinID:
XP_072223782
LinkDB
All DBs
Position
Unknown
AA seq
1415 aa
AA seq
DB search
MFSFVDSRTVLLLVASQLVLLSVVRCQEEDDQTFGAKGQKGEPGDIANVVGPEGPPGPMG
PSGEQGPRGEAGAKGDKGNIGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGETGEPGPAGAMGPRGPPGPSG
KPGSDGEAGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGETGAAGAKG
EGGAAGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVGPAGAPGFPG
SPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGGPGIAG
APGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGSAGPQGAPGPAGEEG
KRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAGPKGATGDPG
RTGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEPGKSGEKGLVGRPGLRGLSGKDGETGAAGPPGPAGPAGERGEQGQPGPPGFQGLPG
PSGSPGEAGKPGDQGVPGEGGVPGAVGPRGERGFPGERGGAGAQGLQGPRGLPGTPGTDG
PKGAIGPAGAPGSQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGPEGASGKDGSRGLTG
PIGPPGPAGPNGAKGETGPTGPSGAPGVRGAPGDRGEVGPPGPAGFAGPPGADGQPGAKG
ELGEAGQKGEGGTPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPGAAGRVGPPG
PNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRQGDAGLRGPSGAPGEKGEPGEDGPPGADG
PSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGTAGDRGPPGPVGPPGLTG
PAGETGREGTPGSDGPPGRDGSTGIKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQGDRG
EAGAQGPAGPSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQGLPGPPGPAG
DAGTSGPAGPSGAKGPPGPVGPAGKDGNNGQPGPIGPPGPRGRSGETGPAGPPGNAGPPG
PPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNSQIENL
RSPDGSQKNPARSCRDIKLCHPEWKSGDYWVDPNIGSIVDAIKVYCNMETGETCVYPSIP
KVPKKNWWTSTSNDRKHVWFGETMNGGFHFSYPQDSPAANVQLTFLRLLSTEASQTLTYH
CKNSIAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDDCKKHSGRWGKTTIEY
KTQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaacttgtttta
ctatccgtggtcagatgtcaggaggaggacgaccagacattcggtgctaagggtcagaaa
ggagaaccaggagacattgcaaatgttgtaggacctgaaggaccaccaggccctatgggc
ccctcaggtgagcagggaccccgaggagaagctggcgctaaaggtgataagggaaatatt
ggacctagaggaagagatggtgagcccggcacccccggaaaccctggaccccccggccca
cctggaccaccagggctcggagggaactttgcagctcagatggctggaggttttgatgag
aaggcagggggcgcacagatgggtgtgatgcagggaccaatgggtcctatgggtccccgt
ggtcctcctggacctactggagctcctgggccacaaggttttcaaggttcacctggtgag
actggagagcccggtccagctggagcaatgggacctcgtggaccacctggaccttctgga
aaaccaggaagtgatggtgaagctggcaaacctggcaaacctggtgagcgtggacctgca
gggcctcagggagctcgtggattccctggaactcctggacttcctggaattaaaggacac
agaggtcatcctggtctggatggagcaaagggagagactggtgctgcaggagccaagggt
gagggtggtgctgctggagagaacggtgcccctggacccatgggcccacggggtctgcct
ggtgagagaggacgttctggagctgcaggagctgcaggtgctcgtggaaatgatggcttg
cccggtcctgctggtccacctggaccagttggtcctgctggagcccctggtttcccagga
tccccaggagccaagggagaagctggccctactggtgcccgtggagctgagggagcacag
ggaccccgcggagaggcgggtacaccaggatctcctggacctgctggagcatcgggtaac
cccggtactgatggtattcctggagccaaaggttctgctggtggtcctggtattgctggt
gctcctggattcccaggcccccgtggcccacctggaccacagggagcaacaggacctctg
gggcccaaaggacagtctggggatcctggacttcctggattcaaaggtgaagctggacca
aagggagagcttggctctgctggtcctcaaggtgcccctggccctgctggagaggaagga
aagaggggtgcaaggggagagcccggagctgctggaccacttggacctccaggagagaga
ggagctcctggtaaccgtggtttccctggtcaggatggtctggctggcgctaagggggct
cctggtgaccgtggtgtcccgggagctgctgggcctaaaggtgctactggagatcctggg
cgcacaggagaatctggtctccctggagcaagaggtcttactggtcgtcctggagatgct
ggtcctcaaggcaaagttggaccttctggcgccgctggtgaggatggtcgccctggccca
cctggtcctcagggagcgcgtggacagcccggagttatgggattccctggaccaaaggga
gccaatggtgaacctggaaagtctggagagaaggggcttgtgggccgtcctggtctgaga
ggtctgtctggaaaagatggtgagactggtgctgctggaccacctggccctgctggacct
gctggagagagaggagagcaaggacagcctggacctcctggcttccagggtttgcctgga
ccaagtggttccccaggagaggctggaaaacctggagaccagggtgttcctggagagggt
ggagttcctggtgctgttggacccagaggtgagcgtggtttccctggtgagaggggtggt
gctggagcccaaggtcttcaggggccccgtggccttcctggaacacctggaactgatggg
cctaagggagcaattggaccagctggtgctcctggatcccagggccccccaggtctgcag
ggtatgcccggagagagaggagctggtggcatcccgggacccaagggagacagaggtgat
aatggacagaaggggcctgagggtgcttctggaaaggatggttctagaggtttgactggt
cccatcggcccacctggccctgctggacccaatggtgccaagggtgagactggacctact
ggccctagcggtgctcctggtgttcgtggtgctcctggtgaccgtggtgaggtcggcccc
cctgggcctgctggctttgctggaccacctggtgcagatggtcagcctggtgccaaggga
gagctcggtgaggctggacagaagggagagggtggtactcctggacctcagggaccatct
ggagctcctggacctgtgggacctactggtgtatctggacctaaaggagcacgtggtgct
cagggagctcctggtgccacaggtttccctggtgctgcaggaagagttggacctcctggt
cctaatggtaacccaggcgctgcaggtcccgctggccctgccggtaaagacggaccaaag
ggtgttcgtggtgatgccggtccaccgggaagacagggagatgctgggctgcgtggacct
tctggcgctccaggagagaagggagagcctggggaggatggacctcctggtgctgatggg
ccttcaggtcctcagggtctgggtggatcacgtggtattgttggtttgccaggtcagcgt
ggtgagagaggtttccctggtctccctggaccttctggagagcctggcaagcagggagca
tctggtactgctggtgaccgtggacctcctggacctgttgggccacctggacttactgga
cctgctggagagacgggcagagagggaacccctggatcagatggaccccctggtagggac
ggctctactggaataaagggagagcgaggtaacactggacccgcaggcgcacctggagct
cccggtgcccctggtgcccctggacctgttggacctcttggcaagcagggagacagagga
gaggctggtgctcaaggacctgcaggaccctcaggaccagctggtgctagaggaatggct
ggacctcaaggaccacgcggtgacaagggagagtctggtgagactggagagaggggacag
aagggtcatcgtggcttcaccggtctgcagggtcttcccggaccccctggtcccgctgga
gatgctggaacttccgggcctgcaggaccaagtggagctaagggaccacctggaccagtc
ggacctgctggcaaagatggtaataatggacagcctggccccattggaccccctggacct
cgtggacgctctggagaaactggtcctgctggtcctcctggtaacgctggacctcctggt
cctcctggtccaccagggcccggcatcgacatgtcagccttcgctggcctgggtcagatt
gagaagtcacctgatcctctcaggtacatgagggccgatgaggcctccagctccctgagg
cagcatgacgttgaggtcgattccacactcaagtccctcaacagccagattgagaacctg
cgcagccctgacggctcccagaagaaccctgctcgctcctgcagagacatcaaactgtgc
caccctgagtggaagagcggtgactactgggttgaccccaacattggcagcatagtcgat
gccatcaaggtttactgtaacatggagactggagagacctgcgtctacccaagcatcccc
aaagtaccaaagaagaactggtggaccagcacaagcaatgatcgcaagcatgtctggttc
ggagagaccatgaatggaggcttccacttcagctatcctcaggatagccctgctgccaac
gtccagctgactttcttgagacttctgtccactgaagcatcccagaccctcacttatcac
tgcaaaaacagcattgcctatatggaccaggccacaggaaacctgaagaaagctttgctg
ctgcagggctccaacgatgtggagatccgtgctgagggcaacagtcgcttcacttacagt
gtgttggaggatgactgcaagaaacacagtggccggtggggcaagactaccatcgagtac
aaaacacagaaaacctcccgtctgccaatcgtggacattgctcctatggacatcggagga
gcggatcaggagttcggagtggatgtaggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
