Leuresthes tenuis (California grunion): 140273706
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Entry
140273706 CDS
T11698
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ltu
Leuresthes tenuis (California grunion)
Pathway
ltu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140273706 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ltu03041
]
140273706 (ddx42)
Enzymes [BR:
ltu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140273706 (ddx42)
Spliceosome [BR:
ltu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140273706 (ddx42)
Complex B
140273706 (ddx42)
Complex C
U2 SnRNP specific factors
140273706 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CARF-assoc_HTH
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140273706
NCBI-ProteinID:
XP_072225455
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MTQTPLGLIEKQKRLQLSETAMNWSKGGPGVKRGFGFGGFSLAGKKDESQPPPNSNTSFG
APGSSGGYGKGQQLPSFYKIGTKRANFDEENAYFEDDEEESGSNVDLPYIPAENSPTRQQ
MQSGGGSDSEDDPLDAFMAEVESQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFR
YMAENPTAGLTQEEEDENIDYDSDGNPIPPTTKKIIMPLPPIDHSEIDYPPFEKNFYNEH
EELSSLTGTQVLELRHKLNLRVSGAAPPKPSTSFAHFGFDEQLMHQIRKSEYTQPTPIQC
QGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQ
IHAECKRFGKAYSLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRV
TYLVFDEADRMFDMGFEYQVRSIASYVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQ
GDIGEANEDVTQVVELLHGGSDKWNWLTRRLVEFTSSGSVLIFVTKKANSDELATNLTQE
GYSLGLLHGDMDQSERNKVISDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDT
HTHRIGRTGRAGEKGVAYTLLTTKDSTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKS
RFKGGKGKKLNIGGGGLGYKERPGLGSEGTERSSSSLLSSTSSFEGYSKPASGAMGDRMS
ALKQAFQAQYKSHFVAATSGPPKLSTKSSSSSGWTSAGSLNSVPTEAANGSERPHMASFS
LAGFTSAGSLSSVPTNQSSSQHSNPPPAPPSQRDSSRDRHGEDRGRHEDSHHRHSDRSDR
HSSEDRRDRHGDRDRDRHGDRDRHSSSRHSDSRNGDGNRRDREDRRGDRDGGDRGSGDGR
DRGDDSFAVPDPPKRRKSRWDN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaactccgctgggtctgatagaaaaacagaagcgtttacaactatcagaaaca
gccatgaactggagcaaaggtggtccaggtgtgaagcgagggtttggctttggaggtttt
tcccttgcagggaaaaaagacgagtctcagcctcctccgaattctaacacatcatttgga
gcaccgggatcaagtgggggatatgggaagggccagcaactcccatcgttctataagata
gggacaaagagagcaaacttcgatgaggaaaatgcgtattttgaggatgatgaagaggag
tccgggagcaatgtggatctgccatacatacctgctgagaactcacccacacgacagcag
atgcagtcaggtggtggctcagacagtgaggatgacccattggatgccttcatggcagaa
gttgagagtcaagcagccaaagacatgagaaaactagaggaaaaggaaaaggagaaaaag
tcagccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgc
tacatggctgagaatcccacagctggacttacccaagaagaagaggatgaaaatattgac
tatgacagtgatgggaacccaattccacccaccaccaagaaaatcatcatgccacttcct
cctattgaccactcagagatcgattacccaccctttgagaaaaacttttacaatgagcat
gaggagctcagcagcctcactggaactcaagtgttggaattaaggcataaactaaactta
cgagtatctggcgctgcccctccaaaacctagtacaagctttgcacactttggctttgat
gagcagttgatgcatcaaattcgaaagtctgagtacactcagcccacacctattcagtgc
cagggtgtccccatcgctctgtctggacgtgacatgattggcattgcaaaaactggcagc
ggcaaaactgcagcttttatctggccgatgttggttcatatcatggatcaaaaggagctg
gaagctggagagggacccattgctgtcattgtgtgtccaacgagagagctttgtcagcag
atccatgcagaatgtaagcgttttgggaaagcctactcattgcgctctgtggctgtgtat
ggaggtggtagcatgtgggagcaggcaaaggctctgcaggagggggcagagattgtggtg
tgcactccaggtcgtctcattgaccatgtgaaaaagaaggccacgtccctgcagagagtg
acataccttgtgtttgatgaggctgaccgcatgtttgatatgggctttgagtatcaggtc
agatctattgccagctacgtccgcccagacaggcagactcttttgttcagcgccactttt
cgaaagaagattgagagattggcgagagacattttgatagatcccattcgtgtggtacag
ggagacattggagaggccaacgaggatgtgactcaggtggtagagctgctgcatggcggg
tcagataaatggaactggttgacccggaggctggtcgagttcacctcctctggatcagtc
ctcattttcgtcaccaagaaagccaactctgacgagctggctactaacctgacacaggag
ggttacagcctgggcctcctgcatggagacatggatcagagtgagaggaacaaggtcatc
agtgacttcaagaagaagaacttgcccgttctggtggccactgatgtagctgcccgtggt
ctggatatcccgtccattcgcaccgtggtgaactacgacgtggcacgggacatcgacaca
cacactcacaggataggtcgaactggtcgtgctggagagaaaggtgtggcctataccctc
ctcaccaccaaagactctacatttgctggagacctggtgcgaaatttggagggagctaat
caagccgtttctaaagaactcatggatttagccatgcagaatccctggtttaggaaatcc
agattcaagggtggtaaagggaaaaagctgaacattggcggaggtggtcttgggtacaaa
gaaagaccaggcctggggtctgaaggcactgaacgtagcagtagcagcttgttgtcttcc
accagtagctttgaaggctatagcaaacccgcttctggggcaatgggagatcggatgtct
gcactgaaacaagctttccaggctcagtataagagccactttgtggctgcaaccagtggc
cctccgaagctcagcaccaagtcgagcagctcctcaggctggaccagtgctggcagcctg
aactctgtgccaacagaggctgctaatggttcagagcggcctcacatggccagcttttca
ttggctggtttcaccagtgctggctccctgagctcagtgccgaccaatcaaagcagctca
cagcacagtaaccctccacctgcacctccctcacagagagatagctcacgggacagacat
ggggaagaccggggacgccacgaagacagtcaccaccgccacagtgacagaagcgaccgg
cacagtagtgaggatcgccgggatcgccatggagacagagaccgtgaccgccatggggac
cgggatcgccacagcagcagccgccatagtgatagtcgtaatggtgacggaaacaggagg
gacagagaagaccggaggggtgatagagatgggggagacagggggagtggagatgggagg
gacagaggggatgatagcttcgctgtcccagacccaccaaaacgtagaaagagcagatgg
gataactaa
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