Leuresthes tenuis (California grunion): 140274627
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Entry
140274627 CDS
T11698
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140274627 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ltu03019
]
140274627 (skic2)
Enzymes [BR:
ltu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140274627 (skic2)
Messenger RNA biogenesis [BR:
ltu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140274627 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
140274627 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
HTH_23
DUF3516
Motif
Other DBs
NCBI-GeneID:
140274627
NCBI-ProteinID:
XP_072226093
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MDRINMPPVGPMDLPMSLLEMGCSGRFELITHPVPGQPLPPQSTLPHGLPPTSLNLETEV
EKQFLRDPAWLPIHDTDSAFQKFLKVTQRETNVDSLLNCTPSPLHSGLSVVRDPTTGMLL
DFTEVLVENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKKKSELE
EDIDFENDLLRVPPGLKAGVDFTDKDAKIAKAEVNLMSLLSTLEDITDLQPETEEKDKGK
DSEETPKRPRTNSLEDLGIKDAVSSSSPPETGKEEKSKPKENPEDKKKWAIPVDIMSPCN
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLMDAVGNFLTKGYYAAVDAKKERTSKHAQ
SFGAKSTSQNTTASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLDSMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQIIFMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISQLKQTLSSLPPFDTQGQLSDLMPYYHTVTELRTTTEALQRGILESVNGL
KALSVGRVVVVNNKQHLNALGVILQVSNDAVNRTFTALVICEKGNEEGEGKANDIAAFPH
LFNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYKKRQQPRFKHDPPGQA
ISTATQELLRLAETNPGGIATLDPVNDLQLKSVDVVEGSMRLRVLQDSLRNFNCIHSPTF
AEQFVRVQERMSVQEELDRLLFLVSDQSLTLLPEYHQRIKVLQALQYVDGSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLS
VAKRIGELQRDCEIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatatgccccctgtgggccccatggacctgccgatgtccctactggag
atgggatgctctggcaggtttgagctcatcacacaccccgtccctggccaacctttacct
ccacagagcacgcttccccacggacttcctcccaccagcctgaacctggaaactgaagta
gagaaacaatttttacgggaccccgcctggcttcctattcacgacacagactctgccttt
cagaagtttctcaaagtaactcagagagagactaatgttgactctctgctcaactgcact
ccctctccacttcactctgggctctcagtggtcagagatccaaccacaggaatgctgctt
gacttcacagaggtgttggtggagaacactggtctgtcggcaaagaactcgctgtcactg
cagcgccagcctggacctccttcagagagccttcgaggaagcaacactaactaccccttc
cttccaggaggaatggaggaactcactctggaccagattaagaagaaatctgagctggag
gaagacatagactttgagaatgatttactgagagtccctcctgggctgaaagctggggtg
gattttactgacaaagatgccaaaatagcaaaggcagaggtcaacctcatgtccctcctg
tccacgctggaagacatcactgatctgcagccggagacagaggagaaggacaaaggcaaa
gacagtgaagagacccccaaacgacccagaacgaacagcctcgaggacttgggcattaag
gatgctgtgtcatcctcatctcccccagagacgggaaaagaggaaaaatcgaagccgaaa
gaaaacccagaggacaaaaagaaatgggccattcccgtggacataatgtcaccctgcaat
gatttctataaacgtatccccaacccagcgttcaagtggcccttcgagctggatgttttc
cagaaacaagctgtgctgaggctggaggctcatgactccgtgtttgtagctgctcacaca
tcagctggcaaaacggtggtggccgagtacgccatcgctctctcacagaagcacatgacc
aggaccatctacacgtctcccatcaaggctctgtccaatcagaagtttagagacttcaaa
aacacctttggagatgttggactcctgacaggtgacgtccagctcagtcctgaatcttcc
tgtctcatcatgaccacagagatcctcaggtcaatgctgtacaacggctcagaggtcatc
agagacctggagtgggtgatcttcgacgaggttcactatatcaatgacgccgagagaggt
gttgtgtgggaggaggtcttgattatgcttccggatcacgtcagcatcatccttcttagc
gccacggtgccaaatgcggtggagttcagcgagtggatcggtcgtattaagaagaggcat
atttatgtgatcagcacaatgaagaggcctgtgcctttggagcattacctgtacactgga
aacagcaccaagactcagaaggagatgttcctgttgatggacgctgtagggaacttcctt
actaaagggtattatgcagctgtcgatgcaaagaaggagcgcaccagtaagcacgcccaa
tcatttggagcaaaaagcacatctcaaaacaccacagccagtcaggacagagcagtgtgg
ctcaccctcctgcacttcctgtcccagcggcagcagaccccagtggttgcattcaccttc
tctcgaactcggtgtgacgagaacgcccgctcactggactccatggacctcaccacctcc
atagagaaagctgagatccactccttcttccagaagagcctcagtcgcctgcgaggtgga
gaccggcagctgcctcagattatattcatgagggatcttttgaagagaggcatcgcggtg
catcatagcgggatcctgccaatcctgaaggaggttattgagatgcttttctcacgaggt
ctcgtaaaggtgctgtttgccactgagacatttgcgatgggtgtgaacatgcccgccagg
accgtggtgttcgacagcatcaggaaacacgacgggaccggctttagaaatctgctgcca
ggtgaatatattcagatggcgggcagagcaggcaggagaggtctggacgccacaggcacc
gtgatcatactgtgtaaggccggcgttcacgagatggcagatctgcacgtcatgatgctg
ggcaagcctaccatcctccagtcccagttcagactgacctacactatgatcctcaatctg
ctgcgagtcgaagctctcagagtgaccgacatgatgaggaggagcttctctgaaagccac
agagacactcaggcacatgagaagaggatcagccagctgaagcagacgttgtcctccctt
cctccttttgacacacagggccagctgtccgatttgatgccttactaccacacagtgaca
gagctgcggaccaccacagaagccctccagcgaggcatcctggagtctgtgaacggactg
aaagctctgtctgtgggtcgagttgtggtggtgaacaacaagcagcatctcaatgctttg
ggagttatcctacaggtgtccaatgacgcagtgaatcgcaccttcacagctctcgttatc
tgcgagaagggcaacgaggaaggagaaggaaaagccaacgacatcgccgctttcccacac
ctcttcaacacagctctgttcatacctgaaggcccgtgcagccacacagtgcagaagttg
aagcttcaggacatctcagccatcacagtgaaaaccctcaaagtgatacccgacagaatc
atcgacaactacaagaagagacaacaacctcgattcaagcatgaccctcccggccaggcc
atctccacggcaacgcaggagctcttgcgattggccgagacaaaccccggcggtatagcg
accctcgaccccgtgaatgacctccagctgaagagcgtggatgtggtggagggctccatg
aggctccgtgtgctgcaagacagcctcaggaatttcaactgcatccactcgcccactttc
gcagagcaatttgttcgggttcaggagaggatgagtgtgcaggaggagctggaccggctg
ctgttcctagtgtcggaccagtctctgactctactgcctgaatatcaccagaggatcaag
gtcctccaggctctccagtacgtggacggcagcggggccgtgcagctgaaaggccgagta
gcttgtcagatcagcagccacgagctgctgctgaccgagctgctcttcgagaacgtcctg
agtccgctggcgccggaggagagcgccgccctgctgtcctgcttggtcttcactcagaac
acacaggtggagccgcacattaccaacacgctgcaggagggcatcgaccgggtgctgtca
gtggctaagaggatcggtgagctgcagcgggactgtgagataccgcagactgctgaggag
ttcgttggccagttcaagttcggcctgactgaggtggtgtactgctgggccagaggcatg
cccttcgctgagatcgcccagctgacagacgtccaggagggcacggtggtccgctgtatt
cagcgcctggatgaggtgctgaaggaggtgcgacaagccgcccgcatcgtgggagactcc
gtcctggggagcaagatggagaaggcctccctggccatccgcagggacatcgtcttcacg
gcctccctctacacccactga
DBGET
integrated database retrieval system
