Leuresthes tenuis (California grunion): 140276767
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Entry
140276767 CDS
T11698
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ltu Leuresthes tenuis (California grunion)
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ltu03041
]
140276767 (ythdc2)
Enzymes [BR:
ltu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140276767 (ythdc2)
Spliceosome [BR:
ltu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
140276767 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
R3H
Helicase_C
HA2_C
OB_NTP_bind
DEAD
WHD_HA2
RNA_hel_CTD
AAA_19
Ank_2
nSTAND3
ATPase
Ank
AAA_23
PhoH
AAA_7
AAA_22
SRP54
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
140276767
NCBI-ProteinID:
XP_072227664
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MLSAAGASQKPAKNQDMAVGWSPRGSSTSDSKEIHIDEEVKIAVNLSLERFRYSEQKEME
FPPSFSSTERAFLHRMAQSLGYISKSKGKGPNRYLTIRKKDVSDKPHPNIPLTLSHSSLY
FVRSLLQRFPISKKERTDMHPNNKGSMSLAAEPDNIYDRNRASGRLNNGIPMVPKRRGPS
ELEKFRCSLPVYEHQEDIIRFIRENKVVLVVGETGSGKTTQIPQFLLDDCCKNRQPCRIF
CTQPRRLAAIAVAERVAAERGECVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGD
GSLTTVTHVIVDEVHERDGLTDFLLTKMQDVLQKIPTLKLILSSAALDIELFLRYFGSCP
VIHLKGRQFEVKDLFLEDILRLTDFNNRDMWKYKEETKRQERKQKHLTEWCEAVETSSVE
EKEMTHVLAPGFLHASSCGDRDDRDLNKTSNKGTEQLEPWLLREMDSCISNIFLYEDQDA
FSQLFNLILNENVNVDSMHSETGATALMVSAGRGFLMQMQQLLIMGANINIVASNGWTAF
DFAKHFQQTDAMDLLRSSIPLQKASNLEESALMQGGGSELSTENQELLKLYHHSFDDQFV
DLDLIMALLYNICSTTSDGAVLIFLPGYDEIVSLRDRILFDDKRFSTHSESYQVFTLHSD
MQTLDQKKAMKTSPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDPVSHTSTLK
TVWISKASVLQRKGRAGRCRPGICFHLFSRLRFNNMLEFQVPQLLRMPLQELCLQTKLLA
PSSCPVAEFLSKAPQPPPAHAIQSAVQMLKTIDALDQYEDLTDLGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAYRDPFILPTESSQKRAALNCRKRFTSNTFSDHMALLRAF
QAWQKARSDGWERSFCQKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLN
SENWAVVKAALVAGMYPNLVHVNKETSVLSSNREKKVHFHPTSILSQLQFKENSQSRSAQ
ALPTDWLIYDEMSRGHRMASVRCCSLVTSITIAIFGGCAKLPCSALHEAAAQRTNDSPPD
DTSDSDTEDLAEMRIDDWLVFQLEREDAALVFELRQKWLNLFIKRIRCPSKPWSQRDEAI
IQTLVSVLGAEEQEAGLQQPTGIGQRPRPMSSEEGPRTSVRNYRSNPQLPTNASNDKSCG
MPALDLLKINTHSRDESSLVINQLSDEPHSSCSSSCSVYLDSPPDSPCPSSSGKQVLKPV
SLQSSVRYFVMKSSNIRNLEISQQKGIWSTTPINESKLTKAFLGNSLIILIFSVQGSGHF
QGYARMTSVISQDSCHDWGFMGLGGVFSVEWIHKDNLSFQSTQHILNPWNDNKRVQISRD
GQELEPLVGSKLLSLWERNSGSQVQ
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgcttagtgcagctggggcctcacaaaaaccagccaagaaccaggacatggctgttggc
tggtcaccacgtggctccagtaccagtgactccaaagaaattcacattgatgaagaagtc
aagatagcagtgaacctctctttggagaggtttcgctacagcgaacagaaagagatggaa
tttcctccctctttttctagtactgagagggcttttcttcatcgaatggctcaatctctg
ggttacatttcgaagagcaaaggaaagggtccaaatcgctacctcaccatcaggaagaag
gacgtttcagacaaacctcatcctaacatacccctcacactctcccacagttccttatat
tttgttcgaagcctgcttcagaggtttcccatcagcaaaaaggaacgtacagacatgcat
cccaacaacaaaggcagcatgtctttggctgcagaacctgacaacatttatgacaggaac
agggcaagcggtcgtctaaacaacggcattcctatggtgccgaagagaaggggtccatca
gaacttgaaaaatttcgatgctctctgcctgtgtatgaacaccaggaggacataattaga
tttattagagaaaacaaggtggtacttgttgtgggagagaccggctctggaaaaactaca
cagatcccacagtttttgttagatgactgctgcaagaatagacaaccctgcaggatcttc
tgtactcagcccagacgcctggctgccattgctgtggcggaaagagtggcagctgagaga
ggggagtgtgtgggccagactgttggttatcacatcagactcgagagcagggtctccccc
aagacactgctgacgttttgcacaagtggagtgctcctcagaaccttgatggcaggagat
ggcagtctcactacggtcacacatgtcattgtggatgaggtacacgagcgcgatggtctt
actgacttcctgctgacaaagatgcaggatgtgcttcagaagatcccgacactgaaactg
atcctttccagtgcagctttggatatagagctgttccttcggtactttggctcctgccct
gttattcacctcaaaggaagacagtttgaagtgaaggacctctttctggaggacattctc
aggctgactgattttaacaacagggacatgtggaagtacaaggaagagactaaaagacag
gagagaaaacagaaacatttgacagagtggtgtgaggcagtggagaccagttctgttgag
gagaaagagatgacccatgtgttagcaccaggcttcctccatgccagcagttgtggggac
agagatgacagggacctcaacaagacgagtaacaaaggcacagagcaattggagccatgg
ctgctaagggagatggactcttgcatttccaacattttcctctatgaagaccaggatgct
ttcagtcaactcttcaaccttatcctcaatgaaaatgttaatgtggactccatgcacagt
gagacaggcgccacagctctgatggtttcagcagggcgaggattccttatgcaaatgcag
cagctgctcatcatgggtgccaacatcaacatagtggcatccaatgggtggactgccttt
gactttgcaaaacacttccagcagacagatgccatggatctactcagatcttccatacct
ttgcagaaggcgagcaacctggaagaatcagctttgatgcagggtggcggttcagagctg
agcactgaaaaccaagagttgctcaaactgtaccaccacagctttgatgatcagtttgtg
gaccttgatctcatcatggctctactttacaacatctgctccaccaccagtgacggtgct
gtccttattttccttcccggatacgatgaaatagtgtccctcagggaccgcatcctgttt
gatgataagagattctccacacactctgagagttaccaggtgttcaccctacattcagat
atgcagactctggatcagaaaaaagccatgaagacctctccaccgggtgttaggaagata
attctttccactaacattgctgaaacaagcatcaccatcaatgatgtggtcttcgtcatt
gattctggaaaggtcaaagagaagtcctttgatcccgtcagtcatacgtccacgttaaag
accgtttggatctccaaagccagtgttctgcaaaggaaaggaagagctgggcgctgccga
cctgggatttgcttccatctcttcagtagactcaggttcaacaacatgctggaattccag
gttccacagctgctacgtatgccactgcaggagctgtgtctgcagaccaaactgctggct
ccctcctcctgtccagttgctgagttcttgtccaaagctccccagccacctccagcgcat
gccatccagagtgctgtacaaatgcttaagactatagatgctctggatcagtatgaagac
ctgactgatttgggctaccacctggctgatctacctgtagagccccacctgggaaagatg
gtactgtgtgctgtagtcctcaagtgtcttgaccccattctcaccattgcctgtactttg
gcctatcgtgatcctttcatccttcccactgagagctctcagaagagagctgctctaaat
tgccgcaaacgtttcacttccaacaccttcagtgaccacatggccctgctcagagctttc
caggcatggcagaaggctcgcagtgacggttgggagagatctttctgtcagaagaacttc
ctgtcccaagcaaccatggacatgatacttggcatgaggacacagctgctaggacaactc
cgtgctattggttttgtgcgtgcccgtgggggcagtgacatccgtgatgtgaatctgaac
tctgaaaactgggctgtggttaaggcagccctggtggctggcatgtatccaaaccttgtc
catgtcaacaaggagacatctgtactctccagtaacagagagaagaaagttcactttcat
cctacatctatcctgagccagctccagttcaaggagaacagccaaagcagatcagcccag
gcccttcccacagactggttgatctatgatgagatgagcagaggccacagaatggcaagt
gtccgctgttgttccttggtgacttccatcaccattgccatttttggaggttgtgccaaa
ctgccctgctctgcactccacgaagctgctgcacagagaacaaatgacagtccaccagat
gatacaagtgacagcgacacagaggaccttgctgagatgaggatagatgactggcttgtg
ttccagcttgagagagaggatgcagcgctggtgtttgaactgaggcaaaaatggctaaat
ttgttcataaagaggatccgttgtccctcaaaaccctggtctcaacgtgatgaggctatc
atccagacccttgtttctgttttgggagcagaggagcaggaagcaggcctgcagcagccc
acagggattggtcagcggcccagacccatgtcatcagaggagggtccaaggacctcagtg
aggaactacaggagcaacccccagctacccaccaatgcctccaatgacaagagttgtgga
atgccagctttagacctgcttaagattaatacccacagcagagatgaaagctccctggtc
ataaatcagctctctgatgagcctcactcctcctgtagttcttcctgctctgtgtatctg
gacagcccacctgactccccctgtccttcctcttcaggaaagcaggtcttaaagccagtg
tccctgcagtcatctgttcgatactttgttatgaagagcagcaacatcagaaacttagaa
atttctcagcagaaaggcatctggtccactacaccaatcaacgagagtaaactcaccaag
gccttcctgggaaatagcctcatcatcctcatcttctctgttcagggttctggacacttt
cagggctatgctcgtatgacatcagtcatcagtcaggacagctgtcatgactggggcttc
atggggctaggaggagttttcagtgttgagtggatccacaaagacaatctttccttccag
tccacccagcacatcctcaacccatggaatgacaacaaaagggtccagatcagcagggat
ggacaggagttggagcccctggtaggcagcaagctactgtcactgtgggagagaaactcc
gggagtcaagttcagtaa
DBGET
integrated database retrieval system
