Leuresthes tenuis (California grunion): 140277420
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Entry
140277420 CDS
T11698
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140277420 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ltu03019
]
140277420 (mtrex)
03041 Spliceosome [BR:
ltu03041
]
140277420 (mtrex)
03009 Ribosome biogenesis [BR:
ltu03009
]
140277420 (mtrex)
03016 Transfer RNA biogenesis [BR:
ltu03016
]
140277420 (mtrex)
Enzymes [BR:
ltu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140277420 (mtrex)
Messenger RNA biogenesis [BR:
ltu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
140277420 (mtrex)
Spliceosome [BR:
ltu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140277420 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
140277420 (mtrex)
Ribosome biogenesis [BR:
ltu03009
]
Eukaryotic type
Pre-60S particles
Helicases
140277420 (mtrex)
Transfer RNA biogenesis [BR:
ltu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
140277420 (mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
140277420
NCBI-ProteinID:
XP_072228527
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MADPFGDGLFSVFDDEQQSSVSKKIPTCVATETGKSAGKNGSDKDAGPSVRVKREADCDG
GDEVVFGKKARHETVSANDLNVAEFMPQVKVEQVETVEGCSHEVALPSDEEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDIGDSGGSSGGGKWDPRGR
KGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNGDDEKRLVEEVF
SNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVRVKN
EDADFGWGVVVNFCKKSNVKASTEFEPLYVVEVLLHCSKDSVKNSATEAAKPATPGETGE
MQVVPIMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVHKRFPDGIPLLDPVDDMGI
KDSGLKKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCEKKALIAADVRTAKQELKKARTV
LQMDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTDMVFNGLFNNLTAEQA
TALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPH
LMDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIIFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccttttggcgacggattgttcagcgtgtttgacgatgaacaacaaagttct
gtcagcaaaaagatacccacatgtgtggctacagaaacagggaaatccgcaggtaaaaac
ggctctgacaaggatgctggtccgtctgttcgggtcaagcgagaggctgactgcgacggc
ggggacgaggtggtatttgggaagaaagctcgacatgagacagtctcagctaatgaccta
aatgttgcagaattcatgcctcaagtgaaggtggagcaggtggaaacagtggaaggatgc
tcccatgaggttgcgctgccctctgatgaagaatataaacccctgaaaccaagagtggga
aaagcagctaaggagtacccttttatactcgaccctttccagcgtgaggccatcttatgt
atcgacaacaaccagtctgtgctagtgtctgcacacacctctgctggcaagactgtttgt
gctgaatatgccattgcgctcgctctcagagagaagcagagggtcatcttcaccagcccc
atcaaggccctctccaaccagaagtacagagagatgtatgaagagttccaggatgtggga
ctcatgaccggtgacgtcaccatcaaccccaccgcctcctgcctcgtcatgacaacagag
atcctgaggagcatgctgtaccggggctctgagatcatgagggaagtagcgtgggtcatc
tttgatgagatccattacatgagagatgcagagcgtggtgttgtttgggaggagacaatc
atccttcttcctgacaatgtgcattatgtcttcctgtctgccaccatccccaatgccaaa
cagttcgctgagtggatctgccacttacacaagcagccatgccatgtggtctacacggac
taccgccccactcctctgcaacactatatctttccagcagggggtgatggactccacctt
gtggttgatgagaatggggacttcagagaagacaatttcaacacagccatgcaggtgctg
agagatattggggattctgggggcagcagtggaggtggcaagtgggacccaagagggcga
aaaggaggcactaaagggccatctagtgtcttcaaaatagtgaagatgatcatggagagg
aactttcagccagtcatcattttcagcttcagtaagaaggagtgtgaggcctacgcccta
caggtggccaaactggacttcaatggtgatgatgagaaacgtctggtggaagaagtgttc
agcaatgcggtggactgtctctcagatgaggataagaaactgcctcaggtcgagcatgtg
ctgcccctgttaaagagggggataggaatccatcacggaggcctgctgcccatcctgaaa
gagaccatagagattcttttctctgaaggcctgctcaaggccttgtttgccacagagaca
ttcgccatgggcatcaacatgccagctcgcactgtgcttttcaccagcgcccgcaagttt
gatggcaagagtcaccgctttattacatcaggtgagtacatccagatgtctggacgtgct
gggaggagaggaatggacgacaggggaattgttattttcatggtggatgagaaaatgagt
ccagccgtgggcaaacagctactgaagggctcagcggaccctttgaacagcgccttccac
ctgacctacaacatggttctcaacctgttgcgcgtggaggaaatcaacccagaatacatg
ctggagaagtcgttctaccagttccaacactacagggctttgcctggtgtagtggagaaa
ataaagaaattggaggagcagtaccacaccattgagattcccaatgaagagagtgtggta
acctattttaagataaggcagcagttggccaaactgggtaaagagatacaagagttcatc
cacaaacccaagtactgcctccccttcttgcagcctgggcgcctcgtcagggtaaaaaat
gaggatgctgactttggctggggagttgttgtaaacttttgcaagaagtctaatgtgaag
gccagtacagagtttgagccgctgtatgtggtggaagttttgctccactgcagtaaagac
agtgtaaaaaactctgcaactgaggctgctaaacctgccacaccaggggagactggagag
atgcaggtggttcccataatgctccatctgctcacttcaatcagctcagtccgtctttac
atccccaaagacctgaggccttttgataacaggcagctcatgctcaagtccattcaggag
gtgcataaacgtttcccagatggcattcctttactcgatcccgttgatgacatgggcatc
aaagactctggactgaagaaggttattcagaaggtggaggccttcgagcaccgaatgtac
acccacccactgcacagtgaccccaacttggaatctgtctattcgctctgcgagaaaaag
gctctgatcgcggcagatgttcgaaccgccaaacaagagctgaagaaagctcggaccgtc
ctgcaaatggacgagctgaagtgccgcaagagggttctgcgcagactcggcttcgccagt
ccctccgatgtcatcgagatgaaagggcgcgtcgcttgtgaaatcagcagtgctgatgag
ctcctgctgacagatatggtgtttaacgggctcttcaacaacctgacggctgaacaagcc
accgccctgctgtcctgcttcgtcttccaggagaacgccagcgagatgccgaaactaact
gaacaactggctgctccgctcagacagatgcaggagtgtgcaaagcgcattgccaaagtg
tctgcagatgccaagctggaggtggacgaggagacgtatctaaaccagtttaaaccccac
ctgatggatgtggtgtatgcctgggccaacggggccacgtttgctcagatctgcaaaatg
acagatgtctttgaaggaagcatcatccgctgcatgcgccgtctggaggaagtactgcga
cagatgtgctctgcagccaaagccattggcaacactgagctggagaacaagtttgcagaa
ggaataacgaagatcaagagagatatcatctttgctgctagtctctatttatag
DBGET
integrated database retrieval system
