Leuresthes tenuis (California grunion): 140282372
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Entry
140282372 CDS
T11698
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu04382
Cornified envelope formation
ltu04510
Focal adhesion
ltu04512
ECM-receptor interaction
ltu04518
Integrin signaling
ltu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140282372 (col4a5)
04518 Integrin signaling
140282372 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140282372 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
140282372 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
140282372 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ltu04147
]
140282372 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
ltu00536
]
140282372 (col4a5)
Exosome [BR:
ltu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
140282372 (col4a5)
Glycosaminoglycan binding proteins [BR:
ltu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140282372 (col4a5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
140282372
NCBI-ProteinID:
XP_072233051
LinkDB
All DBs
Position
Unknown
AA seq
1676 aa
AA seq
DB search
MNKDLKSLRQTVAVLLLCLSLAVQRADSKACHGCSGPKCDCSGVKGEKGERGFPGLTGQP
GVPGFPGPEGPIGPRGEKGDNGPQGPVGPKGIRGPAGLPGFPGMPGLPGLPGQDGPPGPK
GVPGCNGTKGDRGFPGTPGIPGSQGYQGPPGLPGQKGDPGDVFSTNRFGDRGSVGLPGLP
GAPGPSGPPGLQGPIGPPGPQGFDGRPGPPGPPGPKGNMGLNFQGPKGEKGDRGLQGPPG
PPGQVGEQNKPQESEIQRGDKGDPGIPGPRGDPGSPGVPGPSGGQKGEKGEPGEAGKRGK
PGKDGDPGPFGVIGIKGVPGLPGPPGNDGERGEKGTRGFPGPPGVPIGPLNQVGPKGEPG
YPGIPGLKGETGIQGFTGPPGEPGRPGSSFGGPPGPPGLTGERGERGEPGSQGLSLPGSP
GRPGNQGNPGPPGPPGPPGLSTDTNCIPGAPGSPGRQGERGYQGEVGRKGEKGDTCVNCF
GRPSPVPGNPGPPGPPGIPGSPGPQGFKGDRGSQGSPGITGLPGRPGPQGPAGFKGEKGD
AGDSFTVNGVRGEKGDTGFPGSPGLPGLDGRPGRDGQPGIPGPKGVPGFSSVKGERGPPG
EPGVPGIPGDRGPPGGPGYGPPGPSGQKGAQGVSGRRGDPGAPGTKGEPGLSVAEKGLPG
PRGQDGQPGLPGETGSPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGVKGFAGIPGQPGS
PAEPGRPGVDGRPGLPGSPGLKGEPGFGLPGPPGLPGIPGPKGFSGPKGDPGSPGSPGSS
GRPGVDGIPGLKGEPGKDGLPGARGPPGPIVQGPGGPQGPPGLPGPMGSPGYPGINGEKG
DPGPPGLDIPGPPGDRGSPGFPGSPGAVGSPGGPGVPGLDGVPGAPGQKGDMGPFGSPGP
SGGPGAPGGPGAPGFKGEPGFPGRDGTPGPSGVKGERGDIGPQGPPGVTYPSSTVKGEKG
APGQQGGTGPAGQKGISGVPGDPGLPGTDGRPGSPGPPGLKGESGFPGSPGASGPPGLKG
SMGEMGIPGPPGLKGTPGVSGRPASPGQPGIPGLQGPKGEPGSAGVGPPGPTGLKGEPGQ
PGFPGSAGPKGTPGSPGLPGLPGGPGEKGDTGPPGFQGSPGISGPKGLDGRPGAPGGPGG
PGRPGEPGRTGSPGVPGDKGQAGRDGIPGPAGVKGDPGLPGYGEPGSPGLPGQPGEKGDQ
GRPGPSGLPGVPGIKGDIGFSGQPGSPGPGGPPGPPGQPLPGPKGNLGLPGPPGRAGLPG
PQGPRGLPGSGGVKGEKGIAGAPGQPGYAGQKGETGVPGYPGSSGLPGTSGPKGDMGLPG
IPGFRGLKGEPGASGPSGRSGDPGRDGPPGPPGDPAPQRPVDIVKGAPGPPGRKGEAGRP
GSPGANGRDGPLGQPGEPGNPGSDGPPGFNGPPGRKGDSGPSGQSGQRGFPGPPGSDGPQ
GPPGLPGTATAAHGFLITRHSQSIESPFCPEGTNLIYDGYSLLYVQGNERAHGQDLGTAG
SCLRRFSPMPFMFCNINNVCNFASRNDYSYWLSTPEPMSMSPVSGEGIKPYISRCAVCEA
PAMVIAVHSQTIQIPSCPANWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPF
IECHGRGTCHFYGNSYSFWLATVETSEMFRKPQSETLKAGSLRTRVSRCVVCMKRT
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagaccgtggctgtgctcctcctctgcctgagc
ctcgcggtgcagcgagccgactccaaggcttgccatggatgttcaggacccaaatgtgac
tgcagtggagtaaaaggagaaaagggtgagaggggtttcccaggtcttactggacagcca
ggagtcccaggattcccaggacctgaaggaccgatcggacccagaggagagaagggagat
aatggacctcagggaccagttggtccaaaaggaatcagaggacctgctggattgccagga
tttccaggaatgccaggacttccaggtctacctggacaagacggtccaccagggccaaaa
ggagtgccgggttgcaatggaacaaagggtgacagaggtttcccaggaactcccggaatc
cccggttcacaaggatatcagggtccacctggtctaccaggacaaaagggagacccgggt
gatgtgttttccaccaatcgtttcggtgacagaggatcagtgggattgcccggattgccg
ggagctccgggtccttccggtcctccaggtttacaaggtccgatcggccctccaggaccc
caaggctttgacggtcgtccaggtcctcccggtcctcctggaccaaagggaaacatggga
ttgaacttccagggacccaaaggagaaaagggtgaccggggtttgcaaggacctccaggt
cctccaggacaggttggggaacagaataagccacaagagtcggagattcagagaggagac
aagggtgacccaggaattcctggccctagaggtgatccaggctctcccggagtacctggt
ccttctggtggacagaaaggagagaagggagaaccaggagaggcaggcaaacgaggaaaa
ccaggcaaagatggtgatccgggtcctttcggagtcattggaatcaaaggggtgccaggc
ctgccaggtcctccaggcaacgatggagagaggggagaaaaaggtactcgcggtttccca
ggtcctccaggagtgccgattggtccattgaatcaggtcggtcctaagggtgagcctggg
taccccggaatacctggacttaaaggagaaacaggaatacaaggttttacaggtcctcca
ggagaaccaggacgtccaggctccagtttcggtggtccccctggtcctccagggctcaca
ggagaaaggggtgagaggggagaaccgggctcccagggactgtctttaccaggtagccca
ggacggccggggaatcaggggaatcctggtccaccaggcccccccggacctccaggcctt
tccaccgacaccaactgcatccctggagcgcccgggtctcctggtcgtcagggtgagaga
ggttaccaaggagaggtgggccgaaaaggtgagaagggagacacctgcgtgaattgcttt
ggaagacccagtcctgtccccggaaaccccggacctccaggaccgcctggaattcccgga
tctcccggcccccaaggttttaagggagacagagggtcccaaggatcacctggcattacc
ggccttcctggtcgccctggtcctcaaggtcctgcaggtttcaaaggtgagaagggagac
gcaggtgattcctttacagtcaacggtgtgagaggagagaagggtgacaccggcttcccc
ggatcacctggcctgcctggtctggatggtcgacctggccgtgacggacagcctggaatt
cctggtcctaagggagttcctggattctcatcggtaaaaggagaacgagggccccctggt
gagccaggtgtccctggcattcctggggacagaggtcccccaggtggccctggctatgga
cctccaggaccatcaggacagaaaggtgcacagggtgtttcaggaagacgtggagatcct
ggtgctccaggtactaaaggtgaaccgggtctgtccgtggcggagaaaggtttaccagga
cccagaggacaggatggccagccgggacttcccggtgaaacaggttccccaggtcagccc
ggacagcctggtttccctgggttaccaggtgcgaaaggtgatcctggacttccaggcatt
ggacttccaggtcccccaggagttaaaggattcgcaggtattcctggccaaccaggatct
cctgcagaaccaggcagaccaggagtagatggacggcctggattgccagggtctcctgga
ctcaagggtgagcctggctttggacttcctggtcctccaggtctaccaggaatacctgga
cctaaaggtttctctggaccaaagggagatcctggttcccctggcagccctggttcatca
ggacgacctggagttgatggaattccaggacttaaaggtgagcctggtaaagatggttta
cctggagcccgtggaccacctggacccattgttcaaggccctgggggaccacaaggccct
cctggacttccaggcccaatgggatcgccaggttatcctggaataaatggagaaaaagga
gaccccggccctccaggtctagatatcccaggtccaccaggagacagaggaagtcctggt
ttcccaggttcccctggagctgtaggatcccctggaggtcctggagtgcctggactggat
ggagtgcctggagcgccaggtcagaaaggtgacatgggtccctttggatctccaggaccc
tctggaggacctggagccccaggagggcccggtgcaccaggatttaaaggtgaaccagga
ttcccaggaagagatggcacaccaggtcccagcggtgttaagggagagaggggcgacatc
ggcccccagggacccccgggagtcacctatccatcatcaactgtaaagggagaaaaagga
gcaccaggacaacaaggtggaacaggtccggcggggcagaaaggcatctctggtgtcccc
ggtgaccctggattaccaggaacagatggacgccctggaagccccgggccaccaggtctt
aaaggagagtctggcttccctggaagtcctggtgcttccggacctccgggattaaagggc
agcatgggagaaatgggaattccaggaccaccagggctgaagggtacaccaggtgtttca
ggcaggccagcatccccaggtcagccagggatacctggcctccaagggcccaaaggtgaa
ccaggttctgcaggcgttgggccaccgggaccaacaggactaaagggtgagccgggccag
ccagggttcccaggaagtgcaggaccgaaaggaactccaggatcaccgggcctgccaggt
ttaccaggaggaccgggtgaaaagggcgacaccggccccccaggattccaaggctcccct
ggtatcagtggtcctaaaggtcttgatggaagacctggagccccaggtggcccaggaggt
ccaggtagaccaggagagcctggtcgaacaggatcacctggggtgcctggagataagggt
caggcaggtcgggatgggatcccgggaccagctggagtcaaaggagacccagggcttcct
ggctatggtgaacccggttctcctgggttgccagggcaaccaggtgagaagggagaccaa
ggtcgtcctggtccatctgggcttccaggtgtccctggcatcaaaggagacatcggcttt
tccggtcagccaggttctccgggtcccggtggccctccgggacctccaggacagcctctg
ccgggtcctaaaggcaacctaggactgcctggaccacctggaagagcaggtctgcctggc
ccacagggtccccgtggactcccaggaagtggcggcgtaaagggtgaaaagggtattgca
ggtgctcccgggcagcctggctacgccggacaaaagggggagactggtgttccaggatac
ccgggttcctctggtcttcctggtacctcgggtccaaagggagacatgggtctccctggc
attcctggattccgtggactaaagggagagccaggagcttcaggtccaagtggccgtagt
ggagatcccggcagagatggaccgcctggccctccgggtgatcccgctccccaaagacca
gtcgatattgtgaagggagctccaggaccccccggtcgtaagggcgaagctggtcgtcca
ggatcccccggcgctaacggacgagatggacccttaggtcaacctggtgaacctggaaat
cctggttcagatggtcctcctggcttcaacggcccacccggcaggaagggagactccgga
ccatctggacagtctggtcagcgtggcttccctgggccccctggttcagacggtccacaa
ggtccccctggtcttccaggaacagccactgcagcgcatggtttcctcatcacccggcac
agccaatccattgaatcgcccttctgtccggaaggaactaatcttatctatgatggatac
tctctgttgtacgtgcagggcaatgagagggcgcacggacaggaccttggcacagccggc
agctgcctgcgcagattcagccccatgcccttcatgttctgcaacatcaacaatgtctgc
aacttcgcctcccgtaacgactactcctactggctgtccacgccggagcccatgtccatg
tccccagtcagcggggagggcatcaagccttacatcagcaggtgtgcagtgtgtgaagct
ccagcgatggtgattgcagttcacagccagaccatccaaattccatcttgccctgcaaac
tgggaacctctttggattgggtactcctttatgatgcacaccagtgcaggcgccgagggc
tccggtcaggccctggcctctcctggctcctgtctggaggagttccgtagcgctcccttc
atagaatgtcatggcagagggacgtgccacttctatggcaactcctatagtttctggctg
gccacagtggagacttctgagatgttcaggaagccccagtcagagaccctgaaggcgggt
agccttcggacacgcgtcagccgctgcgtggtctgcatgaagcgcacgtaa
DBGET
integrated database retrieval system
