KEGG   Leuresthes tenuis (California grunion): 140304802
Entry
140304802         CDS       T11698                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ltu  Leuresthes tenuis (California grunion)
Pathway
ltu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ltu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    140304802 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ltu03021]
    140304802 (taf5l)
   03036 Chromosome and associated proteins [BR:ltu03036]
    140304802 (taf5l)
Transcription machinery [BR:ltu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     140304802 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     140304802 (taf5l)
Chromosome and associated proteins [BR:ltu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     140304802 (taf5l)
    STAGA complex
     140304802 (taf5l)
    TFTC complex
     140304802 (taf5l)
    SAGA complex
     140304802 (taf5l)
    SLIK complex
     140304802 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd TFIID_NTD2 Beta-prop_TEP1_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin DSE1_N WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SCAP ANAPC4_WD40 CFAP251_N PAC11 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_NOL10_N RMC1_N Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_EIPR1 ASA1 Beta-prop_DCAF4 Tricorn_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st PEP5_VPS11_N PROPPIN WD_LRWD1 Beta-prop_IP5PC_F WD40_like Nbas_N BCAS3_WD40 PD40 MED16_helical Beta-prop_ELP1_1st Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 140304802
NCBI-ProteinID: XP_072239676
LinkDB
Position
Unknown
AA seq 622 aa
MHYNSTCLIHKLTTNGTTRYAVMKRVRTEQIQYAVAQYLKKRQYVDTDGSLKGAKLFQSA
EEMAASLTVQTESGSSNVISAGPCQSDPQQYETQFSRLRSFLSEAEISWAQEVSSILYPL
FIYLHLDMVRFGLKGAVDSFYSRFHDAFHQDGEQRAVIEQLRHVLTAQDIAANPKLRAFL
EHKYVIHLTEPAYSYLLRYLQSEDNGVLCRALSTHLQVEVTVSRCTDYQLYGAAGVSTSA
PNSTSSWVGVDGVEGGEGVEVPAGIPQNEAALDALQDCIKKVREGPPSLTTICFYAFHHT
EQMLNTAEVSADSRLLAAGFDSSTVKLWSLRARKLKATPHQADVSRIHLACDVLEEEADE
EDGCGSEIKTLRGHSGPVYRTAFLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHAYPV
WDVDVSPCSLYFASCSHDRTTRLWTFSRTYPLRLYAGHLSDVDCIKFHPNSNYLATGSTD
KTVRLWSTQQGASVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLR
GHTDSITSLSFSPDSSLVASSSMDNSVRVWDIRNSHGGAPADGSSSELVGLYTGNTSNVL
NVQFMACNLLLVTGTAQEKAEQ
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgcattataactcaacttgcttgatacacaaactgacgactaacggaacaacacgatat
gcagtcatgaaacgggttcgcacagagcagatccagtatgctgtggctcagtacctgaag
aagaggcagtatgtggacacagacggctccctaaaaggagccaagctcttccaatcagct
gaagagatggctgccagtttaacagtacaaacagagtcgggttcttccaacgtcatttct
gctggtccctgtcagtctgacccacaacagtacgagacacagttctccaggctgcgctcc
tttctctcagaagcagaaatatcctgggctcaagaggtgagcagcattctctatccactg
tttatctacctccacctggacatggtgcgctttggcctgaagggggcagtggatagtttt
tacagtcgttttcatgacgcctttcatcaggacggcgagcagcgtgctgtcatagaacag
ctccggcatgttctgacagcacaggacattgcagccaaccccaagctgagagcttttctg
gagcacaagtatgtgattcatctgacggagccggcttacagctatttattgcgttaccta
cagagtgaggacaacggcgtcctctgtagggccctgagcacacacctgcaagtggaggtt
actgtttcgagatgtacagactaccagctgtatggagctgctggtgtttcaacatctgcc
ccaaactccacttcctcctgggtgggagtggatggagtagagggtggggagggggtggag
gttcctgcagggattccgcagaacgaggcagccttagacgctctgcaggactgcatcaag
aaagtccgcgaaggccccccgtcactcactaccatttgtttttatgccttccaccacacg
gagcagatgctgaacacggccgaggtctcggctgacagccggctgctggctgcaggtttt
gacagctctacagtgaagctgtggagcctccgagccagaaaactgaaggccacaccgcat
caggctgacgtatcacgcatccacctggcatgtgatgttctggaggaggaagctgatgaa
gaggatggctgtggtagtgagataaaaacgctgcgaggtcacagtggccctgtgtatcgt
accgccttcctgacagacagctccggcctgctctcttgctctgaagacacaaccatccga
tactgggacctgggcagtttcaccaacactgtgctctaccagggccatgcctacccggta
tgggacgttgatgtgagcccctgcagcctttatttcgccagctgctcacatgaccgcacc
acccgtctttggacgttctctcgcacttacccactgcggctttatgctggacatctctca
gatgttgactgcatcaaatttcacccaaactccaactacctggccactggctccacagac
aagacggtacgactatggagcacccagcagggggcctctgttcgcctcttcactggccac
cgtggccctgtactctcacttgctttttcacctaatgggaagtacctggcttctgctggg
gaggaccagcgtgtgaagctttgggatttggcatcaggcactttgtttaaagaccttcgt
gggcacacagacagcatcacaagtctgtcattcagcccggacagtagcctagtggcatcg
tcatcaatggacaactcggtccgcgtgtgggatatccgcaactcccacggtggggcacct
gctgacggctcatccagtgagctggtgggactgtacactggaaacaccagcaatgtgctc
aatgtccagttcatggcctgcaatctactgctggtgacaggaacagcacaggagaaagca
gaacagtaa

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