Leuresthes tenuis (California grunion): 140309356
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Entry
140309356 CDS
T11698
Symbol
tncb
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu04510
Focal adhesion
ltu04512
ECM-receptor interaction
ltu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140309356 (tncb)
04518 Integrin signaling
140309356 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
140309356 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ltu00536
]
140309356 (tncb)
Glycosaminoglycan binding proteins [BR:
ltu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140309356 (tncb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_Tenascin
EGF_2
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_Dep-1_3rd
Pur_ac_phosph_N
DUF7949
Fn3_Dep-1_2nd
EGF
NDNF
EGF_PEAR1L
FN3_Tor_3rd
REJ
hEGF
SPE9_EGF_3rd
Motif
Other DBs
NCBI-GeneID:
140309356
NCBI-ProteinID:
XP_072243286
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MMRIKGFLLSCVTAALLIQLSTTGLVKKVIRHRREALMPKRTQENLTLPHPDQPVVFNHV
YNINVPSTSLCSVDLDSPGAAELKHKSSPMDMQSTEHMEHTVDGDNQIVFTHRINIPKQA
CSCDNQLPDIKDILNRLEMLESELSSLREQCGSGAGCCGAQVTGEVSTKPYCNGRGNWSS
ETCSCSCEPGWKGHNCTEPECPNDCQDQGRCVDGRCECFEGFDGDDCSIEVCLLDCGSYG
HCFEGSCLCEEGFIGEDCSQTSCLNNCLGRGRCVEDECVCDHPWTGFDCSELICPNDCYD
RGRCINGTCYCEEGFTGEDCGELTCPDNCNNRGMCVNGQCVCQTGYSGEDCSKLTCPKNC
NERGHCFNGKCICDPGFEGEDCSILSCPDNCSNRGQCINGECVCDIGYQGEDCSELSCPN
NCQDRGRCVDGQCVCDKGFAGEDCSIKTCPKDCLGRGECVDGKCVCFVGFTGKDCGELTC
PNDCMDRGRCVNGQCVCHKGFTGEDCSEKTCPKNCLDRGYCVDGSCVCSEGFTGPDCSLL
TCAGDCQNQGRCEDGVCVCDEGFIGEDCSEVSPPKDLTVVEVTPESVDLSWENEMRVTEY
LITYVPTAPGGLELDMRVTGDQKMATIRELEPGVEYFISVYAVLSNKRSVPVSARVATHL
PEPEGLKFKAVRETSVEVQWDPLDIPFDGWNLIFRNTKEEDGEILNSLGRPETTFEQSGL
GPGQEYEVKLEVVKNNKRGPPASKNVVTMIDAPGQVDVRDVSDTTALVTWFQPVADVDGV
SVSYGPSLDPAVRNVVELPSTDTQYHLGGLSPDTQYEVSLKAKRGEQTSIPVYESFLTDL
DAPRELQTVELTDESITLQWKNSQAQVDNYRIKYGPLSGGEHGELLFPTGPKDFTQAKIT
GLRPGTEYGMGVTAVKDERESLPTTTNAVTALDAPKDLTVAEVTETTMMLEWKRPLAKLD
SYRLAYVSADGHRAEDVVPSSSESHTLRGLTPGMLYTISITAERGHKTSVPATISAPTEE
KKPVVTNVTISDVTWESFLLSWSAEDGAFEAFLIEVTDAETGAEWQNHTVPADAHSLAVS
GLSPSTWYRANVYGLYSGGLLDPVFADTITETEPEVQALLVSEVSPDSFMVAWMAEEDVF
DTFVLMVSQAEGLGQPRELVLAGEERNATMTDLSEDTEYKVELFGLVLGRRSESVTERVR
TDLGSPKGIRFSEVTDTSATVHWVTPKARVDIYRVTYVPAHGGVAKTLTVDGSESQTVLS
NLTPGVTYEVTIVAIKGQRESEPGSDSVTTALDKPRGLTGINITDTEALLLWQPAIATVD
GYIITYSADSVAPVMERVSGNVVEFEMSSLTPATHYTVKVYAVRDSARSAATTTEFTTDV
DAPQDLAASNIQTENAMLTWKPPRADITGYILSFESAGGTIREVVLSPTAESYNMAQLSA
STEYSVRLQALAGPKRSRVITTVFTTTGVLYRYPRDCSQALLNGDASSGLYTIYLSGDEN
QALQVYCDMSTDSGGWIVFLRRQSGRQEFFRNWKNYTAGFGDMNDEFWLGLSNLHKITAG
GQYELRVDLRDKGETAYAQYDKFSVSEPRTRYKVHVGGYSGTAGDSMTYHHGRPFSTYDH
DNDIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIDFAEMKIR
PSNFRNLEGRRKRS
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggattaaaggcttcctgttgagctgcgttactgcagcactgctaatccagctc
tccaccactggcctggtcaagaaggtcatccgacaccgcagagaggctctaatgcccaag
agaacccaggagaacctcaccctgccccatcctgaccagccagtagtgttcaaccacgtc
tacaacatcaacgttccctccacgtctctctgctctgtggatctggactcgcccggcgcc
gctgagctcaaacacaagagctccccgatggacatgcagagcaccgaacatatggagcac
acggtggacggcgacaatcagatcgttttcacccaccgcatcaatatccccaagcaagcg
tgcagctgtgacaaccagctgccagacatcaaggacatcctgaacaggctggagatgctg
gagtcagagctgtccagtctgagggagcagtgcggcagtggggccggctgctgtggagct
caggttacaggcgaagtgtccacaaagccctactgtaatggacgtggaaattggagctca
gagacctgcagctgctcctgtgagcccggatggaagggccacaactgcacagaacccgag
tgtcccaacgactgccaggaccagggtcgctgtgttgatggcagatgtgaatgttttgag
ggttttgatggggacgactgcagtattgaagtctgcctgctggactgcggcagctatggc
cattgctttgaggggtcttgtctctgtgaggaaggcttcatcggtgaggactgttcccag
accagctgcctcaacaactgcctgggccgcgggcgttgtgtggaagacgagtgcgtctgt
gaccatccgtggacgggcttcgactgctctgaactcatctgcccgaatgactgctatgac
cgcggtcgctgcatcaacggtacctgctactgtgaggagggcttcaccggagaggactgc
ggtgagctcacatgccccgacaactgcaacaaccgtggcatgtgtgtgaatggtcagtgc
gtgtgtcagaccggctacagcggagaggactgctccaagctcacctgccccaagaactgc
aacgagcgaggccactgcttcaatggcaagtgcatctgtgatcccggctttgaaggcgaa
gactgctccatcctctcctgtcctgacaactgcagcaacaggggccagtgcatcaatgga
gaatgtgtatgtgacatcggataccaaggtgaggactgcagtgagctctcctgccccaat
aactgccaagaccgaggccgctgcgttgatggacagtgcgtatgtgacaaaggctttgct
ggagaagactgcagcatcaagacctgccctaaagactgcttgggacgcggagagtgtgtg
gatggaaagtgcgtctgctttgtcggcttcacggggaaagactgcggcgagctgacctgc
cccaatgactgtatggaccgaggtcggtgtgtcaacgggcaatgtgtctgtcataagggt
ttcactggagaggactgcagtgagaagacgtgccccaagaactgcttggatagaggttac
tgcgtcgatggcagctgcgtgtgctctgagggtttcaccgggccggactgctctctgctg
acctgcgcaggagactgtcagaaccaagggcgctgtgaggacggcgtgtgcgtctgcgac
gaaggcttcataggggaggactgctccgaggtctcgccacccaaggacctgacagtggtt
gaggtcacaccagaatcagtggacctgtcctgggagaatgagatgcgtgtgacagagtac
ctgatcacctatgtgcccacggcccctggaggtctggagctggacatgcgggtcactggg
gaccagaagatggctaccattagggagcttgagcccggtgtggagtactttatcagcgtc
tacgctgtgctcagcaacaagaggagcgttcctgtcagcgctcgggtggcaacgcatctc
cctgaacccgagggtctgaagttcaaagccgtgcgggagacatcggtggaggtgcagtgg
gacccgttggatattccctttgatgggtggaatcttatcttcagaaacacgaaagaggag
gatggtgagattcttaactccctcggccgcccagagaccaccttcgagcagtcaggcctg
ggtccaggccaggagtacgaggtcaaactggaggtggtgaagaacaacaagcgcggaccg
cctgcctccaagaacgttgtcacaatgattgatgcccccggccaggtggacgtgcgggat
gtgagcgacaccaccgcgctggtgacctggttccagcctgtggccgacgtggacggagtc
agcgtctcctacgggcccagcctggaccctgctgtccgcaatgtggtggagctgccctcc
actgacacccagtaccacctggggggcctgagccccgacacccagtacgaggtgtctctc
aaggccaagaggggagagcagaccagcatccctgtctacgaatccttcctcacagacctg
gacgctcccagggagctgcagacagtcgagctgacggatgagagcatcaccctccagtgg
aagaacagccaagctcaggtggacaactaccgcatcaagtatggccctctgtctgggggc
gagcacggagagttgctcttccctactggacccaaggacttcacccaggccaagatcacc
ggcctgagacctggaacagagtacgggatgggtgtgacggcagtgaaagatgagcgggaa
agtctgccaacaaccaccaatgctgtcaccgccttggatgctcccaaagacctgactgta
gcagaggtcactgagaccaccatgatgctggagtggaagcgccccctggccaagttagat
tcctacagactggcctatgtttccgccgatggccacagggctgaagacgtggtaccaagc
agctcggagtctcacaccctgaggggcctgacgcccggcatgctgtacaccatcagcatc
accgcagagaggggccacaaaaccagcgtacccgccaccatctcagcacccacagaggaa
aagaaaccagtggtgactaacgttaccatcagcgatgtgacgtgggagagcttcctcctg
tcctggtctgctgaagacggggcatttgaggcctttctgattgaggttacagatgcagag
acgggggctgagtggcaaaaccacacggtgcccgccgatgctcacagccttgccgtctct
ggcctctcccccagcacctggtacagggccaatgtgtacggcttgtacagtgggggcctc
ttagaccccgtgtttgcagacaccattacagagaccgaaccggaggtgcaggcgctctta
gtgtccgaggtctcccctgacagctttatggtggcctggatggctgaagaagatgtcttt
gacacctttgtcctaatggtgagccaggctgagggcctgggccaacccagagagctggtg
ctggctggtgaagagagaaacgcaacaatgacagatctcagcgaggacaccgaatacaaa
gtggagctctttgggctcgtgttgggaagacgctccgagtctgtaacagagagggtgaga
acagacctgggctcacccaaaggcatccgcttctctgaggtaacagacacatctgccacc
gttcactgggtgactccaaaagctcgggtggacatctaccgggtcacctatgtgcctgcg
cacggaggtgtagccaaaacgctgacggtggacggctccgagtctcagactgtgctttcc
aacctgacgccgggggtcacttatgaggtcaccatcgttgccatcaagggtcagagggag
agcgagcctggatctgacagcgtcaccacagctctcgataagcctcggggtctgactgga
atcaacatcacagacactgaggcgttgctgctctggcagcccgccatcgccactgtggac
ggttacatcatcacgtacagcgcagattctgtggctccagtgatggagcgtgtgtcagga
aatgtggtggagtttgagatgagctccctgacgccagcgacacactacaccgtgaaggtc
tacgctgtgagggactcggcccggagcgcagccacaaccacggagttcaccacagacgtg
gacgccccgcaggacctggcagccagtaacatccagacggagaacgccatgctgacctgg
aaacctccccgtgctgacatcaccgggtacatcctgagctttgagtctgccggcggcacc
atccgggaggtggtcctgagtcccaccgcagagtcctacaacatggctcagctcagcgcc
tccacggagtattcggtccggctgcaggccctcgccggtcccaagagaagcagagtcatc
accaccgtcttcaccaccactggtgtgctgtacagataccccagggactgttcccaggcc
ctcctgaacggggacgcctcatctggtctctacaccatctacctgagtggagacgagaac
caggccctgcaggtctactgcgacatgagcaccgacagcggcggatggatcgtttttctc
cgacgtcagagtggcagacaggagtttttccgcaactggaagaattacacggccgggttt
ggagacatgaatgatgaattctggctcgggttgtccaacttgcataagatcacagctgga
ggtcagtacgagctgcgagtcgacctgagggacaagggagagacggcctacgctcagtac
gacaagttctccgtctctgaacctcggacccgatacaaagtccatgtgggaggatacagc
ggcacggcaggtgactcgatgacctaccaccacgggcgtccgttctccacttatgaccac
gacaatgacattgccgtcaccaactgtgctctgtcctataagggagccttctggtataaa
aactgccaccgggtcaacctgatgggacgatacggcgataacagtcacagcaagggtgtg
aactggttccactggaaaggccacgagcactcaattgattttgctgagatgaagatccga
ccgtctaacttcagaaacctggagggaaggagaaaacgatcataa
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