Leuresthes tenuis (California grunion): 140313176
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Entry
140313176 CDS
T11698
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140313176 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ltu03400
]
140313176 (msh6)
DNA repair and recombination proteins [BR:
ltu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140313176 (msh6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
140313176
NCBI-ProteinID:
XP_072247287
LinkDB
All DBs
Position
Unknown
AA seq
1387 aa
AA seq
DB search
MAKQSSLFNFFTKSPPSVSKPKPSPSPTEADLPSAVEKSNSSPKEEAKQTQQQQPTKTSK
VKQKSSSKTASGGLKKLFGDMAQKTKDSSSTCSFRAGALVWAKLEGHPWWPCMVVPQPLT
GQQMRGRGRDQRIHVHFFDEPPTRGWVNTKYVREYQGSDSSDVKPGGVFFSSKPVIRRAM
ALADGVIFDSPEKRLKIPVCVDPSDEEDEVDDDDDDEEEMELDKSETDEEVSDGEVSKNE
EVKPSKASRRSSRASAEGGSKPKRRRIIMASDSDGSDDEFKPEHAASSSEDEEEEGTVSS
EEEERESTQESEVESPIKPVKRKRPAEKSANTKPKTLAAPSAAPKRAPPAIAANTKSRLS
AFSAPDSFESQATGPGSAGGGTVWDHEKLEWLQEGRRKDSKRRRQSEDDYDPSTLYVPED
FVNRVTPGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVVGVNELGLTFMKGTWAHSGF
PEIGFGRFSDVLVQKGYKVARVEQTETPDMMEARCKTMAKPTKFDRVVKREVCRIITRGT
QTYSVLDGAPSESQSKFLLSLKEKAEEESSGRYRTYGVCFVDTSVGYFHIGQFPDDRHCS
RLRTLIAHFPPAEVLFEKGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKALKTLSEE
DYFKEIAAEEHGTGNSFLPSLIKKMTSESDSLCLTPKEGYELALSAFGGCMFYLKKCLVD
KELLSLANFEEYVPVDVEMEKAAGPASFFAQTRQRMILDGVTLANLEIFQSGSGGTEGTL
LERLDTCCTPFGKRLLKQWLCAPLCNPSSIRDRLDAVDDLMGAQAQATEVSDLLKKLPDL
ERLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISVFAPV
SGGFNSALFRQVVSLKTEKNGLFPDLSAELKRWETAFDHQKARTTGVITPKAGFDPEYDQ
ALMGVKNCERELQEYLDRQKKRLGCKSMSYWGTGRNRFQMEVPDSLSERNVPEEYEVKST
KKGWKRYVTKETERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVLDV
LLALSRYSQGGDGVMTRPQVVLPEDDTQVAPFINLTGSRHPCVTKTFFGDDFIPNDIFIG
CPGSSESDEEEGRAACVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRV
FTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVK
ELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGA
CPKSYGFNAARLASLPEEVIQAGHRKAREFERSTISLRLFKKLCQFAEDATPDITHFASL
VQLLNTL
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcgcttttcaattttttcaccaagtctccgccgtcggtttccaaa
ccgaagccgagtccctctccgaccgaggcagacctgccctccgccgtagagaagtccaac
tcgtctccgaaagaggaagctaaacaaacacagcaacagcagccaaccaagacaagcaaa
gttaagcagaaaagtagctccaagactgccagcgggggactcaagaaactgtttggcgac
atggcccagaaaactaaagacagcagctccacgtgctcattccgtgctggcgcccttgtg
tgggcaaaacttgaaggacacccctggtggccatgcatggtggtgcctcagcctctgact
ggacagcagatgagggggcggggtcgggaccagcgcatccatgttcatttctttgatgaa
cctcccactagaggatgggttaacaccaaatatgtcagagagtaccaaggatctgacagc
agtgacgttaaacctgggggggtgttcttcagcagcaagccggtcattcgccgagcgatg
gcgcttgctgacggagttatttttgacagtcctgaaaagagactgaagatccctgtctgc
gtggatccatctgatgaggaagatgaggttgatgatgatgacgatgatgaggaggaaatg
gagcttgacaagtcagagaccgatgaggaggtcagtgatggggaagtcagtaaaaatgag
gaagtgaagccatctaaagccagtcgacgttcatcccgtgcgtcagcagaaggtgggagc
aaacccaagcgccgtcgcattatcatggcctctgacagcgatggatcggatgatgagttt
aaaccagagcatgctgcgtcgagcagtgaagatgaggaggaagaggggacagtgagtagt
gaagaggaggagagagagagcacccaagagtcggaggtagaaagccccatcaagcctgtt
aagcgcaagcgcccagcagagaagtctgcaaacacaaagccaaagacacttgctgcccca
tctgccgcacctaaacgggccccgccggcaatcgccgccaacacaaagtcccgtttgtca
gccttttctgctcctgacagctttgagagccaggcgactgggccggggtctgctggaggc
ggaacagtttgggatcacgagaagctggagtggctgcaggaaggcagaagaaaagacagc
aaaaggcggcgacagtcagaggatgactatgatccctccaccctgtacgtgcccgaagac
tttgtgaacagagtcactcctggaatgcgtcggtggtggcagctcaagtctgagatgttt
gatacggtgattttctacaaggtgggaaagttttatgagctctaccacatggatgctgtc
gttggagtcaatgagctggggctgacctttatgaaggggacgtgggcacactctggtttt
ccagagatcggctttggacgcttttccgatgtattggtccagaaaggctacaaggtggct
cgtgtggagcagacggagactccagatatgatggaagcgcgttgcaagaccatggctaag
cccacaaaatttgatcgtgttgtgaaaagagaagtgtgccggattatcacacgtggcacc
caaacctacagcgtgttggatggcgctccctcagagagtcagagcaagttcctcctgagt
ctgaaagaaaaagctgaagaggaaagctccgggcgatatcgcacatacggcgtctgcttc
gtagacacttctgtgggttatttccacattggtcagttcccagatgaccgtcactgctca
cgcctgcgcactctgatcgcacattttccccccgctgaggtgctgtttgaaaaggggaat
ccatctgtggagacgcgcaaaatcctgaaggcatctctgtcttctgctctgcaggaagga
cttaatgcaggaacacagttctgggacgctcagaaggctcttaaaaccctctcagaagag
gattattttaaagagattgccgcagaggagcatgggaccgggaacagttttctcccttct
cttataaaaaagatgacctcagagagcgattcactgtgcctgactcccaaggaggggtat
gaactggcgctgtcagctttcgggggctgcatgttctacctaaagaaatgtctggtagac
aaagagttgctttccttggccaactttgaagaatatgtccctgttgatgttgagatggaa
aaagctgccggacctgccagtttctttgcacagactcgtcagcgtatgatccttgacgga
gtgactttggccaacttggaaatctttcagagtggatcgggcggaaccgaagggacactg
ttggagcgtttggacacgtgctgcaccccgtttggcaagaggctgctaaagcagtggctc
tgtgctccgctgtgtaacccctcttccatcagggacagactggatgcagtggatgaccta
atgggggctcaagctcaggcgactgaggtgtcagacctgttgaagaagctcccagacttg
gagcgtctcctgagtaaaatccacagcattggcactcctctaaaaggccaggaccatcct
gacagcagagcagtcctctatgaagaggtcacttacagcaagcgcaagatagcagacttc
ctctctgcactggaaggtttcaaaactatgcaggagatcatttccgtctttgctccagtt
tcaggtggatttaattctgcattgtttcgacaagttgtcagtctgaagactgaaaagaac
ggcctctttcccgacctctctgccgaactcaagcgctgggagactgctttcgaccaccag
aaagcccgcactacaggtgtcataaccccaaaagctggcttcgaccccgaatacgaccag
gctctgatgggagtcaagaactgtgagcgagagctgcaggagtacctggacagacagaag
aagaggcttggctgtaaaagcatgtcctactggggaactgggcggaaccgctttcagatg
gaagttcctgacagtctctcggagaggaatgtccctgaggagtatgaggtgaagtctaca
aagaaaggctggaagcgttacgtgacgaaggagaccgagcgcctcttctcagagctgcag
ggattcgaagagaagagagatgctgcactgaaggactgcatgaggaggctcttctacaac
tttgataagaactacagagactggaagactggcgtggagtgcatggcagtgcttgatgtg
ctgttggctttgtcgcgctacagccagggtggagatggagtaatgaccaggcctcaggtg
gtgctccctgaggatgacacccaggttgcgcccttcattaacctcactggatcccgtcac
ccctgtgtcaccaagaccttttttggcgacgactttattcccaacgacatcttcatcggc
tgccctggaagcagtgaaagtgatgaggaggaaggccgtgccgcttgtgttcttgtcaca
gggccaaacatgggcggaaagtcgactctcatgcgacagtgtgggcttgtgatcattctg
gctcagctggggtgctacgttccagctgagagcctccgttttacaccagttgacagggtc
ttcaccaggctgggagcctctgatcgaatcatggctggagaaagcaccttctttgtggag
ctgagtgagactgccagcatcctgcaccatgccacaaaacactcacttgtgcttcttgat
gaattgggaaggggcacagccacatatgacggcacagcgattgccagcgctgttgtgaag
gagctcgctgagaagatctgctgtcgcacgctcttctccacacattaccactccctggta
gaggattacgccaacaaccctgctgtgcggttgggccacatggcatgcatggtcgagaat
gaatgcgaggatccaagtcaagagacgatcacattcctctacaagttcatcaccggtgct
tgtcctaagagttatgggttcaatgctgcccgactagccagcctaccagaggaggtcatc
caggcaggacacaggaaggccagagagttcgagaggagcacaatcagcctcagactattc
aagaagctctgccagtttgctgaagatgccacaccagacatcacacactttgcttcactt
gtgcagctgctcaacaccttgtag
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