Leuresthes tenuis (California grunion): 140314363
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Entry
140314363 CDS
T11698
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140314363 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ltu03041
]
140314363 (prpf8)
Spliceosome [BR:
ltu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
140314363 (prpf8)
Complex C
U5 SnRNP specific factors
140314363 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
140314363
NCBI-ProteinID:
XP_072248629
LinkDB
All DBs
Position
Unknown
AA seq
2346 aa
AA seq
DB search
MAATFPYRGVPPGMPPVVPPGVPPGVPPPAPVPDYMSEEKLQEKARKWQQLQAKRYSEKR
KFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLESMPMP
WEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPF
DDEEPPLDYADNILDVEPLEAIQMELDSEEDSSVAEWFYEHQPLKDTAKFVNGTTYRRWQ
FTLPMMSTLYRLANQLLTDLVDMNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQ
DEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPA
FYFDPLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPR
PFNLRSGRTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKK
RYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLT
GMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTI
LQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDK
TVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPP
LSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPP
LLVYKWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYM
TAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPN
DFLSFQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYN
NKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNM
CGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILM
ASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPS
RFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLY
RYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT
LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTL
FKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYV
GFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETV
QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG
DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQA
MAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALI
RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKA
TEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWP
TLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEI
EKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNH
IYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVP
QWGTHQTVHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGE
KTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLG
FFMVPGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNAD
REDMFG
NT seq
7041 nt
NT seq
+upstream
nt +downstream
nt
atggcagctacctttccctacagaggtgtccctccggggatgccaccagttgttccacca
ggtgtacccccaggtgttcctcctcctgcgcctgtcccagactacatgtctgaggaaaaa
ctgcaagaaaaagcaagaaaatggcagcagctgcaggcaaaacgctactcggagaagaga
aagtttggctttgtggatgcccaaaaggaggacatgccacctgagcatgtccgcaagatt
atcagggaccatggtgatatgaccaacagaaagtttcgccatgacaagagggtctacttg
ggtgccctcaagtacatgccccacgcagtgctgaagctgctggaaagcatgccgatgccc
tgggaacagatccgagatgtgcccgtgctctaccacatcaccggagccatttcctttgtg
aatgaaatcccctgggtcatcgagccagtctacattgcccagtggggcaccatgtggatc
atgatgcgtcgtgaaaagcgtgatcgacgacacttcaaaaggatgcgttttccaccattt
gatgatgaggagccgcctcttgactatgctgacaacatccttgacgtggaacccctggag
gccatccagatggagctcgactctgaggaagattcttcagttgcggagtggttctacgaa
catcagccactcaaagatactgccaagtttgtgaacggaacaacttaccggcgctggcag
ttcacgctgcccatgatgtcaacactgtaccgtctggccaatcagcttctgacagatctg
gttgacatgaattacttttatctgtttgacctgaaggccttcttcacttccaaggccttg
aatatggccatcccaggaggacctaagtttgagccgctggtcagagacatcaacctgcag
gatgaagactggaatgagttcaatgacatcaataaaatcatcatccgacagcccatcagg
acggagtacaaaatcgccttcccctacttgtacaacaacttgccgcatcatgtgcacctc
acctggtatcatacaccaaatgtggtgtttatcaagacggaggatcctgatctaccagcg
ttctactttgacccgctgatcaaccccatttctcacagacattctgtcaagagtcaggaa
cctctccctgatgacgatgaagagtttgagcttcccgagtatgtggagcccttcctcaaa
gagacccccctctacactgacaacacagccaatggcatcgctctgctctgggctccgaga
cccttcaacctccgctctggtcggacaaggcgagccatcgatatccccctgatcaagaac
tggtacagagagcattgccctgcaggacagccagtgaaagtacgtgtgtcgtaccagaaa
ctgctcaagtactacgtgctcaatgctctcaaacacaggccacccaaagcccagaagaag
aggtacctgttccgctcttttaaagccacaaagttctttcagtccacaaagctggactgg
gtggaggtcggcctgcaggtatgcagacagggttacaacatgctcaatctgctcatccat
cgtaagaacctcaactatctacatttggactacaacttcaacctgaagcctgtcaagacg
ctgacaacaaaggagcgaaagaagtccagatttggaaatgccttccacctgtgcagagag
gttctgcgtctcagcaagctggtggtggacagccatgtgcagtacagactgggaaatgtt
gacgctttccagttgtctgatgggctgcagtacatctttgctcatgtgggccaactgaca
ggcatgtaccgctacaagtacaagctgatgagacagatcaggatgtgcaaagacctgaag
catctcatctattaccggttcaacaccggaccagtgggcaagggtccaggttgtggattc
tgggcccctggctggagagtgtggctgttcttcatgaggggcatcactccgctgttggag
aggtggctggggaatctgctggccaggcagtttgaaggacgtcactccaagggtgttgcc
aagactgtgaccaaacagcgcgtggagtctcactttgacctggagttgcgtgctgcagtg
atgcatgacatcttggacatgatgcccgagggtatcaaacagaacaaggccagaaccatc
ctgcagcacctcagtgagtcctggaggtgctggaaagcaaacatcccatggaaggtgcca
ggcctccccactcccattgagaacatgatcctgcgttatgtgaaggccaaagctgactgg
tggaccaacaccgctcactacaaccgtgagcgaatccgacgaggagccactgtggacaag
acagtgtgcaagaagaatttggggagactgacccgtctgtacctgaaagctgagcaggag
agacagcacaactatctgaaggatggtccctacatcacagcagaagaggctgtggccatt
tacaccaccactgtgcactggctggagagtcggcggttctcgcccatccccttccccccg
ctgtcctacaaacacgacaccaagctgctgatcctggcactggagaggctcaaagaggca
tacagtgtgaagtctcgtctgaaccagagccagagggaggagctgggcctgatagaacag
gcctacgacaacccccacgaggccctttccaggatcaagcgtcacctgctcacacagaga
gcattcaaagaggttggtatcgaattcatggatttgtacagccacttggtgccagtctac
gatgtggaacctctggagaaaatcactgacgcctacctggaccagtacttgtggtacgag
gcagacaagagacgcttgttcccaccctggatcaaacctgctgataccgaaccaccgccg
ctgttagtctacaagtggtgccaaggcatcaacaacctgcaggatgtgtgggaaactgct
gaaggagagtgcaacgtgatgctggagtcccgttatgagaagatgtacgagaagattgat
ctgacgttgcttaacaggctgctgcgtcttattgtggaccacaacattgctgactacatg
acagccaagaacaatgtggtcataaactacaaggacatgaaccacaccaactcttacggc
atcatcagggggctccagtttgcctcattcattgtccagtattacggcctggtgatggac
ctgctggtgctcggcttgcaccgtgccagtgagatggccggcccacctcagatgcccaat
gacttcctcagtttccaagacaccgccacagagagcgcccacccaatcagactgtactgt
cgctacattgaccgcatacacatcttcttcaggttttctgctgacgaggccagggacctg
attcagaggtacctgacggagcatccagaccctaacaatgagaacatagtgggttacaac
aacaagaagtgctggcctcgtgatgctcgcatgagactgatgaaacacgatgtcaacctt
ggacgtgcagtattttgggacatcaagaaccgtctgcccaggtccgtcaccacagtccag
tgggaaaatagctttgtttcagtctacagcaaagacaaccccaacctgctcttcaacatg
tgtggcttcgagtgtcgcatccttcccaagtgccgcaccagctatgaagagtttactcac
aaggacggagtctggaacctgcagaatgaggtaactaaggagaggactgcccagtgtttc
ctgcgtgtggatgatgaatcaatgcagcgtttccacaacagagtgcgtcagatcctgatg
gcctccggatccaccactttcaccaagattgtgaacaagtggaacacggctctgatcgga
ctgatgacgtacttccgcgaggctgtggtcaacacacaggagctcctggacctgctggtg
aaatgtgagaacaagattcagacgcgtatcaagatcggcctcaactccaaaatgcctagc
cgcttccctcctgtggtcttctacactcccaaagagttgggtggcctcggcatgttgtcc
atgggtcacgtgcttatcccacagtcagacctgcggtggtccaagcaaacagatgtgggc
atcacacacttcaggtctggaatgagccatgaagaagaccagctcattcctaacttgtat
cgttatattcagccgtgggagagtgagttcatcgactctcagagagtctgggccgagtac
gccctcaagagacaggaggctattgcccagaacaggcgtcttaccttggaagatttggag
gactcgtgggacagaggaatcccccggatcaacacacttttccagaaggacagacacaca
ctggcttatgacaaaggctggagagtcaggacagacttcaagcagtatcaggtgctgaag
cagaatccgttctggtggactcaccagaggcacgacggtaagctgtggaacctgaacaac
taccgaacagacatgatccaggctctgggtggcgtggagggtatcctggagcacaccctc
ttcaaaggcacttatttccccacatgggagggtctcttctgggaaaaggccagtggcttt
gaagagtctatgaaatggaagaagctgaccaacgcccagaggtctggtctcaaccaaatc
cccaaccgtcgcttcacactttggtggtcacccaccatcaacagagccaacgtgtacgtg
ggtttccaagtacagctggacttaacaggaatcttcatgcacggcaagatccccacactg
aagatctccctcattcagatcttcagggctcacttgtggcagaagattcatgagagcatt
gtcatggatctctgtcaggtgtttgaccaggagctggatgcattggagattgagacggtg
cagaaggagaccatccatcccaggaagtcgtacaagatgaactcgtcctgcgcagacatc
ctcctctttgcgtcgtacaagtggaacgtttcacggccgtctctgctggctgactcaaag
gacgtgatggacagcaccaccacacaaaagtactggattgacattcagctccgctggggt
gattacgactctcatgacattgagcgttatgccagagccaagttcctggactacaccaca
gacaacatgagtatctacccctcccccaccggagtgctcattgctatcgacctggcttac
aacctccacagtgcttacggtaactggttccctgggagcaagcctctgatccagcaggcc
atggccaagatcatgaaggccaaccctgccttgtatgtgctcagggagcgcatccgtaaa
ggtctgcagctgtactcctctgagcccactgagccctacctgtcctcacagaactatggt
gaactcttctccaatcaaatcatctggtttgtggatgacacaaatgtgtacagagtcact
atccacaagacctttgagggtaacttgacaacaaaacccatcaatggagccattttcatc
ttcaaccccaggactggacagcttttcctcaagatcattcacacatctgtgtgggcagga
cagaaacgtctgggacagctggccaaatggaaaaccgctgaagaagtcgccgccctgatt
cgctcgcttcctgtggaggagcagccaaaacagatcattgtaaccaggaagggcatgctg
gaccctctggaggtccacttgctcgacttccccaacattgtgatcaagggctcagagttg
cagctgcccttccaggcctgtctgaaggtggagaagtttggagatctgatcctgaaggct
acggagccacagatggtgctgttcaacctttatgatgattggctgaagaccatctcatct
tacacagccttctcccgactcattctgatcctgagagcgctccatgtcaataacgaccgc
gccaaagtgatcctgaaacccgataaaacgaccatcaccgagccccatcacatttggccc
acgctcactgatgaggaatggatcaaggtggaggtgcaactcaaggatctcattctggct
gattatggcaaaaagaacaatgtgaatgtggcttcgctgacccagtctgagatccgtgac
atcatcctgggtatggagatctctgctccgtcacagcagcgtcagcaaattgcagagatt
gagaagcagaccaaagaacagtcgcagctcaccgccacacagacccgcaccgtcaacaag
cacggcgacgagatcatcacctccacaacctcaaactacgagacccagaccttctcttct
aagactgagtggagagtcagggccatatctgccgccaacctccatctccgaaccaaccac
atctacgtgtcgtctgacgacatcaaggagacaggttacacctacatcctgcccaaaaat
gtcctcaagaagttcatctgcatctcagatctgcgagcacagattgcaggttacctgtac
ggcaccagcccaccagacaacccccaggtgaaggagatccgttgtatcgtcatggtgcct
cagtggggaacgcatcagacggtccacctgccaaaccagctgcctggccacgaatatctc
aaagaaatggagcccctcggctggatccacacgcagcccaacgagtcaccgcagctgtcc
ccgcaggatgtcacgacgcacgccaaggtcatggcagataacccttcttgggacggagaa
aagaccatcatcatcacttgcagcttcacgccaggctcgtgcacactcacagcttacaag
ctgacacccagtgggtacgaatggggtcgccagaacacagacaagggcaacaacccgaaa
ggttacctgccatcccattatgaaagagtgcagatgctgctctctgatcgcttcctgggc
ttcttcatggtgcctggccaagtctcctggaattacaacttcatgggtgtgcgccacgat
cccaacatgaagtacgacctgcagttggccaaccccaaagagttctatcatgaagtccat
cggccatcgcacttcttaaacttcgcctcgctgcaggagggcgagatctacaacgctgac
cgtgaggacatgttcggctga
DBGET
integrated database retrieval system
