Leuresthes tenuis (California grunion): 140315924
Help
Entry
140315924 CDS
T11698
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ltu Leuresthes tenuis (California grunion)
Pathway
ltu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ltu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140315924 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ltu03041
]
140315924 (dhx16)
Enzymes [BR:
ltu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140315924 (dhx16)
Spliceosome [BR:
ltu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140315924 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
PWI
nSTAND3
Motif
Other DBs
NCBI-GeneID:
140315924
NCBI-ProteinID:
XP_072249637
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGTARKASSSDDFVSRLEQTGTIDIDPSVAAFA
KELFEKIPRKEVAEKPARALERQAIEMDRKNRTYTLLEDSDSGEEAVKEKQKGKKKSKEK
GNNRKHIRQKRGSESSSEDEASKRGNSGQEDHKSLKKEEEEEEWEKEERERLQDIEERDA
FAQRVREKDKDKTRNIAERTDKKAYEEAQRRLKMAEDSQKNMLPELRKRSRWEYLKKREA
EKMEDLEAEIIDDEYLFTSEELTEREKKDLEYKRTLRDLAKEYKKAGAKEQEERKNRYYM
PEEKRRKEVPERDLEVEEIPMELGGEQGRWEEERLKTASLSFGAKKEREQGMRQEQERYQ
LILEEDEMINFISTAITMKGTRTEKDQEAPALSQAELKKQSMQEVRRSLPIFPYREDLLA
AIQEHQILVIEGETGSGKTTQIPQYLLENGYTQGGMKIGCTQPRRVAAMSVAARVAEEMS
VKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTD
ILFGLIKDIARFRSDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEAD
YLEACVVSVLQIHITQLPGDILVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIYAN
LPSDMQAKIFSPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLI
VTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSL
GINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILA
SEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWVE
SGFSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSCDGDSMPIRKAVTAGYFYH
TARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIESGWLLE
VAPHYYKSKELEDSSSKKMPRKQGKAKEELG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttagagcagtgggtgaatgaccgtctccacgacatcctcggattgagtgac
agatatgtgtctcagttcatgattggcacggctcgcaaagcgtcgagttctgacgacttt
gtgagccgcctcgagcagacgggcacgatcgacatcgatccgtctgtggctgcctttgcg
aaggagctctttgaaaagatcccccgcaaggaggttgctgagaaacctgcccgagcattg
gaacggcaagctatcgaaatggatcggaagaatcggacgtacacgttactggaggacagc
gacagcggagaagaagctgtgaaggagaagcagaaagggaagaagaaaagcaaagagaaa
ggaaacaacaggaagcacatcagacagaagagaggcagcgagtcttccagtgaggatgaa
gcatccaaaaggggtaattctggccaagaagaccacaagtctctgaagaaagaagaggag
gaggaagagtgggagaaggaggagagggagcgcctgcaagacattgaggagagggatgcg
tttgcccagcgagtgagagagaaagataaagacaagacccgcaacatagcagagagaacg
gataaaaaggcttacgaggaggctcagaggaggctgaagatggctgaagatagccagaaa
aatatgttgccagagttgaggaagcgttcccgttgggaatatttaaagaagagagaagca
gagaagatggaggacctggaagcagagatcatagatgacgagtaccttttcacctcagaa
gagctgacggaaagggagaaaaaagacctggagtacaaacgcaccctcagggacctggcg
aaagagtacaaaaaggccggggccaaggaacaggaggagaggaagaacagatactacatg
ccggaagaaaagaggaggaaggaggtgcccgagagggacctggaggtggaggaaatcccg
atggagctgggaggagagcagggccgctgggaggaggagaggctgaagacagcctccctc
agcttcggggccaagaaggagcgagagcaggggatgaggcaggagcaggagcgctaccag
cttatcctggaggaggacgagatgatcaacttcatcagcacggccatcaccatgaagggg
acgcggactgagaaggatcaggaggccccggcgctgtctcaggccgagctgaagaaacag
tccatgcaggaggtccggcgcagcctgcccatcttcccctacagagaggacctgctggct
gccatccaagagcaccagatcctggtcatcgaaggggagacgggctcaggaaagaccacc
cagatcccacagtacctcctggagaacggctacactcagggagggatgaagattggttgc
acgcagccccgcagagtggcagccatgtcggtggcagccagagtggcagaggaaatgagc
gtcaagctcggcaacgaggtgggatacagcattcgcttcgaggactgcacatcagaaaga
actattctcaagtacatgaccgacggcatgctgcttcgagagtttctcaccgaacccgac
ctggccagctacagcgtcatcatcatcgatgaagcccacgagcgaactctccacacggac
atcctgttcggcctgattaaagacatcgccaggttcagatcggacctgaaggtgctggtg
gcgagcgccaccctcgacacggagcgcttctcctgcttcttcgacgatgctcctgttttc
aggattcctggcaggaggttccctgttgacattttctacactaaagctccggaggcagac
tacctggaagcatgtgtcgtatcggtgctgcagatccacatcacccagctacctggagac
attctggtcttcctcacaggacaggaggagatcgaggcgtgctgcgagctgctccaggag
agatgcaggcggctggggtcaaagatagcagagctgctggtcctccccatctatgccaac
ctgccctctgacatgcaggcaaagatcttcagccctactcctcctggagcccgcaaggtg
gtggtggccaccaatatcgcagaaacgtcactgaccatcgacggcattatctacgtcatt
gatccaggcttctgcaagcagaagagctacaacgcccgcacaggcatggagtcgctgatt
gtcacgccctgctcacgggcctcagccaaccagagagcaggccgtgcaggcagagtggct
gctgggaaatgctttcggctgtacacggcctgggcctttaaacacgagatggaggaaacg
actgtgcctgagattcagaggaccaacttgggaaatgtagtcctgctgctgaaaagttta
ggtatcaatgatctgattcactttgacttcatggacccacctcctcatgagactctggtg
ttggccctggaacagctctatgctttgggagcgctcaaccacctgggagagctcacaaag
ctgggtcggaggatggctgagttacccgtagaccccatgctgagcaagatgatcctggcc
tctgaacagtacaaatgttcagaggaagtgttgacgatagcagccatgctgtcggtgaac
aactccattttttaccggcccaaagacaaggttgttcacgccgacaacgccaggatgaac
tttgtggtgccgggaggagaccacctggtgctgctcaacgtctacacacagtgggtggag
agcggcttctccacgcagtggtgctacgagaacttcatccagttccgctccatgagaaga
gcccgggacgttcgggaccagctggagggtctgatggatcgcatcgaggtggaggtggtc
agctgtgatggagacagcatgcccatccgcaaggcggtgaccgcaggatatttctatcac
acagcgcggctcagcaaaggcggctacaagacggtgaagcaccagcagacggtctacgtc
catcccaacagctccctgttcgaggagcagccccgctggctcatctatcacgagctggtc
ttcaccaccaaggagttcatgagacaggtgattgagatcgagagcggctggctgctggag
gtggcccctcactactacaagagcaaagagctggaggacagcagcagcaagaagatgccc
cgcaagcagggcaaagcaaaagaagagctgggctga
DBGET
integrated database retrieval system
