KEGG   Leuresthes tenuis (California grunion): 140317681
Entry
140317681         CDS       T11698                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
ltu  Leuresthes tenuis (California grunion)
Pathway
ltu03013  Nucleocytoplasmic transport
ltu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ltu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140317681 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    140317681 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ltu03019]
    140317681 (thoc3)
   03041 Spliceosome [BR:ltu03041]
    140317681 (thoc3)
Messenger RNA biogenesis [BR:ltu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     140317681 (thoc3)
Spliceosome [BR:ltu03041]
 Complex C
  Other components
   EJC/TREX
    140317681 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    140317681 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st eIF2A Beta-prop_EML Beta-prop_Vps41 DSE1_N Beta-prop_WDR36-Utp21_1st WD40_RFWD3 RMC1_N Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 Tricorn_2nd WDR90_beta-prop_4th PAC11 TRM82_WD PD40 Beta-prop_ACSF4 B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 ASA1 Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Peptidase_S9_N Beta-prop_Nup120_160 Beta-prop_NWD2_C WD_LRWD1 Cytochrom_D1 Beta-prop_SCAP Beta-prop_WDR11_1st TP_0598_N DPPIV_N Beta-prop_ELP1_1st PROPPIN Beta-prop_DCAF4 YNCE
Other DBs
NCBI-GeneID: 140317681
NCBI-ProteinID: XP_072251261
LinkDB
Position
Unknown
AA seq 322 aa
MASQYYQEMQESFKNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHSDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPVQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
DGKYENNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcgcagtactaccaagagatgcaggagagctttaaaaataacaacaaaagtcgt
gaattccctgctcatacagccaaagtccactcggtggcgtggagctgcgatggcaggaga
cttgcctctgggtcttttgacaaaacagcgagcgtttttgtcctggaaaaggaccgtttg
gtgaaggagaacaactacagaggtcacagcgacagcgtggatcagctctgctggcatccc
accaacccagacctgttcgtcacagcatctggagacaaaaccattcgcatatgggacgtc
cgcaccaccaaatgcatcgccactgtcaacacgaagggtgagaacatcaacatctgctgg
agccccgacggtcagaccatcgctgtgggtaacaaagatgacgtggtgaccttcatcgac
gccaagacgcaccgctcgaaggcggaggagcagtttaagttcgaggtgaacgagatctcc
tggaacaatgacaacgacatgttcttcctcacaaacggcaacggctgcatcaacattctg
agttacccggagctgaagcccgtccagtccatcaacgctcacccgtccaactgcatctgc
atcaagttcgaccccacggggaagtacttcgccacaggaagtgccgacgccctggtcagc
ctgtgggacgtggaggagctggtgtgcgtccgctgcttctccaggctggactggccggtg
aggacgctgagcttcagccatgatggcaagatgttggcctcggcctcggaggatcatttc
atagacatcgcagaggtggaaacaggagagaagctgtgggaggtgcagtgtgactctcca
acctttacagtcgcctggcacccgaagaggcccctgctggcctacgcctgcgacgacaag
gacggaaagtacgaaaacaaccgcgaggcgggcaccgtcaaactgttcggcctcccaaat
gactcctga

DBGET integrated database retrieval system