Lachnoanaerobaculum umeaense: D4A81_01770
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Entry
D4A81_01770 CDS
T05639
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lua
Lachnoanaerobaculum umeaense
Brite
KEGG Orthology (KO) [BR:
lua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lua03009
]
D4A81_01770 (rlmD)
Enzymes [BR:
lua01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D4A81_01770 (rlmD)
Ribosome biogenesis [BR:
lua03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D4A81_01770 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
PrmA
Methyltransf_15
MTS
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_4
Methyltransf_11
PCMT
RrnaAD
TPMT
DUF6738
SMMA_C
Motif
Other DBs
NCBI-ProteinID:
AYA98766
UniProt:
A0A385PXS8
LinkDB
All DBs
Position
421621..423012
Genome browser
AA seq
463 aa
AA seq
DB search
MKTRNTLNYKKGEMITVDIIDFGENGEGIGKTDAFTWFIKDTVIGDKVTAKVMKTKKSYG
YARLDSIVKESPDRIEAKCPVARSCGGCTLQSLDYKAELKLKQNKVENHLKRIGGFDLSN
VEIEEIIGMEDPNRYRNKSQFPFGRKNGKNITGYFAGRTHSIVEFDDCIIGIEENKTVLK
TVLDFMEKYSLDAYNEEDINGIVRHVLIRKGFATGELMVCIVINENNLAHSDKLVESLCA
SLGSDLKSISININKKNTNVILGDTTVTLYGNGYIEDYIGDVKFRISPQSFYQVNPVQTK
KLYAKALEYAKLTGEETVWDMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNAIENAKINN
IDNVKFFVGKAEEIITGEYESGNIRDIDVIVVDPPRKGLDKLAIDTMLKLLPKRIVYVSC
DSSTLARDLKLLCEKKYELKKLTVVDQFARSYHTESVCLLEQC
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaaatacattgaattacaaaaaaggtgaaatgataacagttgatataata
gactttggagaaaatggtgaaggcatcggaaagaccgatgccttcacatggtttataaaa
gatactgttatcggggataaagtcacagcaaaggtgatgaaaacaaagaaaagctacgga
tatgcaagacttgacagcatagttaaggaaagccccgacagaatagaggccaaatgtccg
gtggcaagaagctgtggaggatgtacattacaaagccttgattataaagcagagcttaaa
cttaagcaaaacaaagtggaaaatcatctaaagagaataggaggctttgacctgtcaaat
gtagaaatagaagaaattatcggtatggaagatccaaacagatacagaaataaatctcaa
tttccgttcggaagaaagaacggaaaaaatattacaggttattttgcaggcagaactcac
agtattgtagagtttgatgactgtattataggtatagaagaaaataagactgtattaaag
actgttcttgactttatggagaagtatagtttggatgcctacaatgaggaagacataaac
ggcatagtaagacatgtacttataagaaagggatttgctacaggtgagctgatggtgtgc
atagttataaacgaaaacaatctggcacatagtgataagcttgtagagagcttatgtgca
tcacttggaagtgatttaaaatctatttctatcaacattaataaaaagaataccaatgtt
atattaggagatactacggtaactctttatgggaatggttatatagaggattacataggc
gatgtgaagtttagaatatcgccacagtccttttatcaggtaaatcctgttcagaccaag
aagttgtacgctaaagcactggagtatgccaaattgaccggtgaagaaacagtttgggat
atgtactgtggtataggtacgatttcactgtttcttgcaaagtccgcaaagtttgtctac
ggtgtggagatagtagatgctgccatacaaaatgcgatagagaatgcaaagataaataat
atagataatgtaaaattctttgtaggaaaggctgaggagataattacaggagaatatgaa
agcggtaatataagagatatagatgtaatagtggtggatccgccaagaaaaggacttgat
aagctggcaatagataccatgctaaagcttctaccaaagagaatcgtatatgtaagttgt
gattcatcaacactggcaagagatttaaaactgctatgtgagaagaaatatgagctaaag
aaactgacagtggtggatcagtttgcgaggagctatcatacggagagtgtatgtttactg
gagcaatgttag
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