Lachnoanaerobaculum umeaense: D4A81_04720
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Entry
D4A81_04720 CDS
T05639
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lua
Lachnoanaerobaculum umeaense
Brite
KEGG Orthology (KO) [BR:
lua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lua03009
]
D4A81_04720 (rlmD)
Enzymes [BR:
lua01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D4A81_04720 (rlmD)
Ribosome biogenesis [BR:
lua03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D4A81_04720 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
MTS
RrnaAD
N6_N4_Mtase
Methyltr_RsmB-F
PCMT
Motif
Other DBs
NCBI-ProteinID:
AYA99303
UniProt:
A0A385Q3P3
LinkDB
All DBs
Position
1036992..1038446
Genome browser
AA seq
484 aa
AA seq
DB search
MAERINKRNIKVSKEQKCAVAKKCGGCDYINSSYNKHVKEKLDIANSLIKKYGKFDGIVS
MSNPYHYRNKVSAVFGFENKKIIAGTYQKNSHRVVDTKNCLIEDEKASSIIQTIKKMCVS
FKIKAYDEDSGFGFLRHVLIRVGKKSGQIMVVLVTSNVIFPNKNAFIKVLRGEHPEITTI
VQNINNKNTSIVLGDREIVMYGKGYIIDELCGLNFKISPKSFYQVNREQTEKLYSQAIEY
ADLKDDEVLLDAYSGIGTIGLIASKSVKEVISVELNKDAHKDAITNAKINNIKNVKFYNA
DATAFINDLAAAKEKIDVVILDPPRTGSTEEFIAAVGRLKPRKVVYISCNPETLARDLES
FKKQRYGFEKGKLFDCFCHTGHVEGVALLSKLDVDKHISVEVELDELDLTSAESKASYAQ
IKEYILEKFDLKVSTLYIAQIKKKCGIVLRENYNKSKKEKQVIPQCTPEKEEAIMDALRH
FKMI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagaattaacaaaagaaatataaaagtttctaaggagcaaaaatgtgcagtt
gccaaaaaatgtggcggatgtgattatataaacagttcatataataagcatgtcaaggag
aaacttgatattgcaaattctttgataaaaaaatatggtaaatttgatgggattgtctca
atgagcaatccctatcattataggaataaggtaagtgcagtttttggctttgaaaataag
aaaattattgccggtacttatcagaagaactcccatagagtggttgatacaaaaaactgt
cttattgaagatgagaaagcaagcagtattatacagaccatcaagaaaatgtgtgtatca
tttaaaatcaaggcatatgatgaagacagtggttttggattcttgcgccatgttctaatt
cgtgtaggcaagaaaagcggtcagattatggttgttttggtgacctcaaatgtaatcttt
ccaaataagaatgcttttatcaaggtacttagaggagaacatccggaaataactaccata
gtgcaaaatataaataataaaaacacaagtatagtacttggcgacagggaaatagtgatg
tatggtaagggttatatcatagatgagctatgtggccttaattttaagatttcaccaaag
tcattctatcaggtaaatagagagcagacagaaaagctttattctcaagcaatagagtat
gcagacttaaaagatgatgaagtgctattggatgcttactccggaataggaacaatagga
ctgattgcctcaaaatctgttaaagaagttatatccgtagaactaaataaagatgcccat
aaagatgccatcacaaatgctaagataaataatataaagaatgtgaaattctataatgca
gatgcaacagcatttataaatgatttggcagcagccaaagaaaaaatagatgtggtaatc
cttgatccgccaagaaccggctctacagaagagtttatagcagcagtaggtaggctgaag
ccaaggaaggtggtatatatctcctgcaatccggagacacttgcaagagatctggaaagc
tttaaaaagcaaagatatgggtttgagaagggaaagttatttgactgcttttgccatacg
ggtcatgtggagggggtagcattattgtccaaacttgatgtcgataagcatataagtgtt
gaagtagagctggatgaacttgatttgacaagtgctgaaagtaaagcgtcttatgcacaa
attaaggaatatatattagaaaaatttgatttaaaggtttcgacactctatattgcacag
attaaaaagaagtgtggaattgtactgagggagaattataataaatcgaaaaaagagaaa
caagttattccacagtgtacacctgagaaagaagaagccatcatggatgcgttaaggcac
tttaaaatgatttaa
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