Lachnoanaerobaculum umeaense: D4A81_05470
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Entry
D4A81_05470 CDS
T05639
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lua
Lachnoanaerobaculum umeaense
Pathway
lua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D4A81_05470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lua03021
]
D4A81_05470
03019 Messenger RNA biogenesis [BR:
lua03019
]
D4A81_05470
Transcription machinery [BR:
lua03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D4A81_05470
Messenger RNA biogenesis [BR:
lua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D4A81_05470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
S1CSD-TOTE-2
OB_RNB
Rho_N
AAA_22
AAA_14
NACHT
ATPase_2
Spore_III_AA
Presenilin
Motif
Other DBs
NCBI-ProteinID:
AYA99428
UniProt:
A0A385PZ31
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All DBs
Position
1197746..1199449
Genome browser
AA seq
567 aa
AA seq
DB search
MRDKLQTLSLVQLKEIAKEQGFKGVSNLNKANIIELLVEFSENQNKGAEKNEGGSSEMTT
RDNSYQRDNYSNQNNYSNQNNYSNQNRNNYGSTQRNNVNQNRTMGYNNSYQNGQRYNNQG
NMPNHYQNQNQYNNQNQYNGANQYQNQYNGSNQYQNQYSQQNQSGYRNEYYDNQFVSRFP
RDYGTDIRDLDSGEVAEGILEVMPDGFGFIRCENFLPGDNDVYVSPAQIKKFKLKTGDVV
SGMKKIKTASEKFAALLYINTVNSFSPDTLETRPNFEDLTPIFPNSRIHLAKDDSASKAM
RIVDLLSPIGRGQRGMIVSQPKAGKTTLLKEIAKSITANQEDMHLIILLIDERPEEVTDI
KEAIVGDNVEVIYSTFDEVPERHKRVSEMVIERAKRLVEHGKDVVILLDSITRLARAYNL
TVAPSGRTLSGGLDPTALHMPKRFFGAARNIREGGSLTILATALVDTGSRMDDVVFEEFK
GTGNMELVLNRKLSEKRIFPAIDVLKSSTRRDDLLLSPDEAEVVSLMRKATDMAKPEEVA
ERIIEEFNLTNNNEELVASILGRGRFI
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgagagataaattacaaactttatcattagtacagttaaaagaaattgcaaaagagcag
ggatttaagggagtcagtaacctaaataaagcaaatataatagaattattagtagagttt
tctgaaaatcagaataaaggagcagaaaaaaatgaaggaggttcgtctgaaatgacgaca
agagataattcatatcaaagggataattattcaaatcaaaataattactcaaatcaaaat
aattattcaaaccaaaacagaaataattatggtagtacacagagaaataatgtaaatcag
aacagaacaatgggatataataattcatatcagaatggacaaagatacaataatcagggg
aatatgcctaatcattatcaaaaccaaaaccagtacaataatcaaaatcagtacaatggt
gcaaatcaataccaaaaccagtataatggttcaaatcaatatcaaaatcaatatagccag
caaaatcagtccggctatagaaatgaatattatgataatcagtttgtttcaagatttcca
agggattatggaacagatataagagatttggattcaggagaggttgcagagggcattctt
gaggtaatgcctgacggatttggatttattagatgtgagaactttttgccgggagataat
gatgtatatgtttcgcctgcacagataaagaagtttaagttaaaaaccggtgatgttgta
tcggggatgaagaagataaagacagcttcagaaaagtttgcagctctcttatatataaat
acagtaaattcattctcaccggatacattagagacaaggcctaattttgaggacttgaca
ccaatattccctaatagtaggatacaccttgccaaagatgattcagcatcaaaggcaatg
agaatagtggacctgctttcaccgataggtagaggacaaagaggtatgatagtttcacag
ccaaaggcaggaaagacaactcttttgaaggagattgcaaagtccattacagcaaatcaa
gaggatatgcatcttatcatattgcttatagatgagagacctgaagaggttacagatatt
aaagaagcaatagtgggggataatgtggaagttatatattctacattcgatgaagtacct
gagagacataagagagtatctgaaatggttatagagagagcaaagagacttgtggagcat
ggaaaagatgtagttatattactagattctatcacaagacttgccagagcttacaatctt
acagtagcaccaagtggtagaacattatccggaggtcttgatcctactgcacttcatatg
ccaaagcgtttctttggagctgcaagaaatataagagagggtggaagccttacaatactt
gctacagctttagtggatacaggtagcagaatggatgatgttgtgtttgaggagtttaag
ggtaccggaaatatggagttggtgcttaacagaaaactttctgaaaagagaatattccct
gcaatagatgttttgaagagttctacaagaagagatgatttacttttaagccctgatgag
gcggaagtagttagcttgatgagaaaagcaactgatatggcaaagcctgaagaggtagct
gaaagaattattgaagaatttaatttgacaaataataatgaagagcttgttgcatctatt
ttaggaagaggacgttttatttaa
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