Lachnoanaerobaculum umeaense: D4A81_10725
Help
Entry
D4A81_10725 CDS
T05639
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lua
Lachnoanaerobaculum umeaense
Pathway
lua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D4A81_10725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lua03021
]
D4A81_10725 (rpoC)
03400 DNA repair and recombination proteins [BR:
lua03400
]
D4A81_10725 (rpoC)
Enzymes [BR:
lua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D4A81_10725 (rpoC)
Transcription machinery [BR:
lua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D4A81_10725 (rpoC)
DNA repair and recombination proteins [BR:
lua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D4A81_10725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Tudor_krimper_1st
Apocytochr_F_C
PRC
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AYB00361
UniProt:
A0A385Q1X3
LinkDB
All DBs
Position
complement(2286809..2290561)
Genome browser
AA seq
1250 aa
AA seq
DB search
MPENNDAYQPISFDAIKIGLASPEKILQWSHGEVTKPETINYRTLKPERDGLFCERIFGP
SKDWECHCGKYKKIRYKGTVCDRCGVEVTKSSVRRERMGHIKLAAPVSHIWYFKGIPSRM
GLIMDIAPRILEKVLYFASYIVLDGGDTALNYKQVLSEREYRDAIDTYGYGSFRAGMGAE
SILEILSNIDLEKESVELKEALVEATGQKRAKIIKRLDVVEAFRSSGNKPEWMILTNVPV
IPPDIRPMVQLDGGRFATSDLNDLYRRIINRNNRLARLLELGAPDIIIRNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIY
QCGLPKEMAIELFKPFVMKELVEKGTAHNIKSAKKMVERMQNDVWDILEGVIKEHPVMLN
RAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLL
LSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAKGEGKFFKSVNEAILAYDNKIVTL
HSKIKVRISKKLENGEVLSETVESTVGRLLFNEIIPQDLGFVDRSIPGNELKPEIDFLVK
KKQCKQILEKVINVHGLSRTAEVLDDIKAIGYKFSTIASMTVSISDMTVPESKGELIKNA
QATVDRIAKNFARGFITEEERYKEVIKTWDMTDKQLTRDLLDGLDAYNNIFMMADSGARG
SDKQIKQLAGMRGLMADTTGHTIELPIKSNFREGLDVLEYFISAHGARKGLSDTALRTAD
SGYLTRRLVDVSQDLIVRETDCCEGKEIPFMEIKAFSDGKEVIESLEERITGRYIAETIT
DPDTGEVVVKANHMCTPKRAAAVMKVLDKLGRDSVKIRTILSCKSHTGICAKCYGANMAT
GQAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLA
IITEFGGVVELRDTKKKREIIVTNNETGESKAYLIPYGSRIKVGNGDVLEAGDELTEGSV
NPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHIEVIVRQMLKKVRIEENNDADVL
PGNSMDVLDYNDMNEKLIAEGKTPAEGKQVMLGITKASLATDSFLSAASFQETTKVLTEA
AINGKVDHLIGLKENVLIGKLIPAGTGMKRYRSVTLNTDEFMVDTDEIILSEDDPALVDI
KEELIADAKEALESEEKASEMETKSEASSEESSKEESNENDVETKTDTEE
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaacaatgatgcttatcagccaatttcttttgatgcaattaagattggtttg
gcttctcctgaaaaaatactacagtggtctcatggtgaagttacaaaacctgagactata
aactataggacattaaaaccggagagagatggtctgttttgtgaaagaatattcggacca
agtaaggactgggaatgtcactgtggaaaatataagaaaattcgctacaaaggaactgtt
tgtgacagatgtggcgtagaggtaacaaagtccagtgtgcgtagagagcgtatgggtcat
ataaaattggcagctccggtatctcatatctggtactttaagggaattccttcaagaatg
gggcttatcatggatatagcacctcgtatcttggagaaagtattatactttgcatcatat
atagtattggatggaggcgatacagccctcaactataagcaggtgctttcagaaagagag
tatagagatgcaatcgacacctatggctatggttcatttagagcaggtatgggtgcagag
agcattttagaaatattaagcaatattgaccttgaaaaagagtcggtagaattaaaagaa
gcattggtagaggctacaggacaaaagagagcaaagatcattaagagacttgatgtggta
gaggcttttagaagctcaggaaataagcctgagtggatgatacttacaaatgtacctgtc
ataccgcctgatattagacctatggtacagcttgacggtggtagattcgctaccagtgac
ttgaatgatctttacagaagaattataaatagaaataaccgcttggcaagacttttagag
cttggtgctcctgatatcattatcagaaacgagaagagaatgttacaggaagcggtagat
gctcttatagacaatggtagaagaggaagacctgttacaggtccgggaaatagagcactt
aaatcactttcagatatgctaaagggtaagcagggaagattccgtcagaaccttcttgga
aagcgtgttgactattcaggaagatctgttatcgtagtaggacctgagcttaagatttat
cagtgcggtctgccaaaagagatggctatagagctatttaagccttttgtaatgaaagag
cttgtagaaaagggaacagctcataatataaaatctgccaagaaaatggtagagagaatg
caaaatgacgtgtgggatatacttgagggagttatcaaagagcatcctgtaatgcttaat
agagcacctacacttcatagacttggtattcaggcatttgagcctgtacttgtagaaggt
aaagctatcaagcttcatccgcttgtatgtacagcgtttaatgcggactttgacggtgac
cagatggctgtccatttgccactttcagttgaggcacaggcagagtgtagattcctactg
ctctcaccaaacaacctcctaaagccttcagatggtggccctgttgccgttccttcacag
gatatggtacttggaatttattatctgacacaggaaagacctggagcaaagggagaaggg
aagttctttaagagtgtaaatgaagcgatacttgcatatgacaataagatcgttaccttg
cattcaaagataaaggtcagaataagtaaaaagcttgaaaatggagaggttttatcagag
actgtagaatctacagtaggtagacttctgttcaatgagataatacctcaggaccttgga
tttgtagatagaagtattccgggaaatgagttaaagcctgagattgatttccttgtaaag
aaaaagcagtgtaagcagatcttagagaaagttatcaatgtacatggactttcaagaaca
gcggaagtgctggatgatataaaggcaattggctataagttctcaactattgcatctatg
actgtttctatttcagatatgacagtacctgagagtaagggagaacttataaagaatgca
caggctactgtagatagaatagcaaagaactttgcacgtggatttattacagaggaagag
agatataaggaagttataaagacctgggatatgacagataagcagctcaccagagacctg
cttgacggacttgatgcatacaacaatatctttatgatggctgactcaggagcgagaggt
tctgataagcagataaagcagcttgcaggtatgcgtggtcttatggcagatacaacagga
catactatagagcttcctattaagtcaaactttagagagggacttgacgttttggagtac
tttatctcagctcatggtgcgagaaaaggactttcagatacagctcttcgtacagccgat
tcaggataccttacaagaagacttgtagatgtttcacaggaccttatcgttcgtgaaaca
gactgctgcgaaggcaaggaaattccatttatggagatcaaagctttctcagacggtaag
gaagttattgagagcttggaggagagaatcacaggaagatatattgcagagactataaca
gatcctgatacaggagaagtcgtagtaaaggcaaatcatatgtgtactccaaagagagca
gctgcagtgatgaaggtgcttgataaacttggaagagacagcgtaaagataagaacaata
ctttcttgtaaatcacatacaggtatctgtgctaaatgctatggtgcaaacatggctaca
ggtcaggctgtgcaggtaggtgaggcagtaggtatcattgccgctcagtctatcggagag
ccgggtacacagcttactatgcgtactttccataccggaggtgttgccggtggagatatc
acacagggtcttcctagagtcgaagagcttttcgaggcaagaaagccaaagggacttgca
atcatcacagagtttggtggtgttgtagagcttagggataccaagaaaaagcgtgagatc
attgtaacaaacaatgaaacaggtgagtcaaaggcatatctgattccatatggttcaaga
ataaaggtaggaaatggagatgtattggaggccggtgatgagcttacagaaggtagcgta
aacccacatgatatccttaagataaaaggagttcgtgcagttcaggactacatgcttcgt
gaggtacaaagagtatatagacttcagggtgttgagatcaacgataagcatatcgaggtt
atcgtgcgtcagatgctgaagaaggtaagaatagaagagaataatgacgcagatgtactt
ccgggaaattcaatggatgttctggattataatgatatgaatgaaaagctcattgcagaa
ggcaagactccggcagaggggaagcaggtaatgcttggtatcaccaaggcctctcttgca
acagattcattcctttcagcagcatcatttcaggagactacaaaggtacttacagaagcg
gctatcaatggtaaggtggatcaccttatcggacttaaggagaatgtacttatcggtaag
ttgataccggctggtacaggtatgaagagatacagaagtgtaactctaaacacagatgaa
tttatggtagacacagatgaaatcatcttaagcgaggacgatcctgcccttgttgatatt
aaggaagagttgatagctgatgcaaaggaggcacttgagtctgaggaaaaggcttctgag
atggagactaagagcgaagcatcttctgaagaatcttcaaaggaagagtctaatgaaaat
gatgttgaaactaaaacagatactgaagaataa
DBGET
integrated database retrieval system
