Luteitalea sp. TBR-22: TBR22_A12640
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Entry
TBR22_A12640 CDS
T09892
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lub
Luteitalea sp. TBR-22
Pathway
lub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TBR22_A12640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lub03400
]
TBR22_A12640
Enzymes [BR:
lub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TBR22_A12640
DNA repair and recombination proteins [BR:
lub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TBR22_A12640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BCS32059
UniProt:
A0A915U8P1
LinkDB
All DBs
Position
complement(1538392..1539270)
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AA seq
292 aa
AA seq
DB search
MITHPDKVLFPDDGITKGDVAAYYEAVAPVMLPHLRGRPITMERYPAGIGAKGFWQKDVS
KGFPPWLERVEVAKKDGVVHHAVVDDLRALLWVANQNTITQHVWPARRPHLDRPDLCVFD
LDPANDDDAAGVRTAALALRDLLGELGLRSWIKTTGSKGFHIVVPLDGKSTTGQAARFAD
AVGRLAVRLAPDTLTQEFAKADRGGRIYMDTGRNGYSATFAAPYTLRARRGAAVSAPCTW
EEIEDGTVHPGSFTLRTMRDRMDAVGDPWADLQAGGQSLKGPVAAVRTRLSA
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgatcacccatccggacaaggtgctcttccccgacgacgggatcaccaagggcgacgtc
gcggcctactacgaagcggtggccccggtgatgctgccgcacctgcgcggccgcccgatc
acgatggagcgctacccggccggcatcggcgccaagggcttctggcagaaggacgtgtcg
aagggcttcccgccctggctggagcgcgtggaggtggccaagaaggacggcgtcgtgcac
cacgccgtggtcgacgacctgcgagcgctcctgtgggtcgccaaccagaacacgatcacg
cagcacgtgtggccggcgcgccggccgcacctcgatcgccccgacctctgcgtcttcgac
ctcgacccggccaacgacgacgatgcggcgggcgtgcgaacggcggcgctggcgttgcgc
gacctgctcggggaactcggcttgcgctcctggatcaagaccaccggctccaagggcttc
cacatcgtcgtgccgctcgacggcaagagcacgacggggcaggcggcgcgatttgccgat
gccgtgggccggctggccgttcgcctcgcgcccgacaccctgacgcaggagttcgccaag
gccgatcgcggcggccggatctacatggacacggggcgcaacggctacagcgccacgttt
gccgcgccctacaccctcagggcccggcggggggcggcggtgtcagcgccttgcacgtgg
gaggagatcgaggacggcacggtgcatcccgggtcgttcacgctgcggacgatgcgcgac
cggatggatgcggtcggcgatccgtgggccgacctgcaggccggcgggcagtcgctgaag
gggccagtggcggccgtcagaaccaggctgtcagcctag
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