Luteitalea sp. TBR-22: TBR22_A16380
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Entry
TBR22_A16380 CDS
T09892
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lub
Luteitalea sp. TBR-22
Pathway
lub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TBR22_A16380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lub03019
]
TBR22_A16380
03400 DNA repair and recombination proteins [BR:
lub03400
]
TBR22_A16380
Enzymes [BR:
lub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TBR22_A16380
Messenger RNA biogenesis [BR:
lub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TBR22_A16380
DNA repair and recombination proteins [BR:
lub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TBR22_A16380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCS32424
LinkDB
All DBs
Position
1982194..1983660
Genome browser
AA seq
488 aa
AA seq
DB search
MAPPIPWPRVLRTLRQTFGLRALRPGQGEVIRSVLARRNTLAVMPTGAGKSLCYQLPAVL
MPGTTIVVSPLIALMKDQVEKLGSLGVEARQVNSAITSSEEQEALAHIEEARSEFVLTTP
ERLASSEFLDTLRQQPIDLFVIDEAHCISQWGHDFRPAYLQLRQAIAALGHPPVLALTAT
ATPQVIEDIATHLGVADFGVINTGTYRPNLHLEAVACADEDDRATHLARVVAGLAGPTIV
YVPTVKLASSVHERLSARDPGTPIGLYHGRLGRAARHASHDAFMSGEVSLMVATNAFGLG
IDKPDIRAIVHVGLPGSLEQYYQEAGRAGRDGEPARCVLLHAPHDRRLQRYFIGGVARGD
DADPEASGARREADVARLDRLVAWAQSGLCRWAQVLDYFGETLPDQRCGHCDNCDRLLER
PLPVAAPEAVRRTALPDPAPATAGLRAGVVVSTAHGPGEVVAVHDDKVDVRSPDGTVRTF
SATFVTPA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcccatcccgtggccgcgcgtgctccgcacgttgcggcagaccttcggcctt
cgtgcactgcgccccggccagggcgaggtgatccggtcggtgctcgcccggcgcaacacc
ctggcggtcatgcccaccggggcgggcaagtcgctctgttaccagttgccggcggtgctg
atgccgggcacgacgatcgtcgtgtctccactcatcgcgctgatgaaggaccaggtggag
aagctgggcagcctgggcgtcgaggcgcgccaggtgaacagcgccatcacctcgagcgaa
gagcaggaagcgctcgcgcacatcgaggaggcgcgcagcgagttcgtgctcacgacgccg
gagcgtctcgcgtcgtcagagttcctcgacacgctgcgacagcagcccatcgacctgttc
gtgatcgacgaggcccactgcatctcgcaatggggccacgacttccggcccgcctacctg
cagttgcggcaggccatcgcggcgctcgggcatccaccggtcctcgccctcacggccacc
gccacgccacaggtgatcgaggacatcgccacccacctcggcgttgccgacttcggcgtg
atcaacaccgggacgtaccgccccaacctgcatctcgaggcggtcgcctgcgccgacgag
gacgatcgcgccacgcacctggcgcgcgtcgtcgccggcctggccggacccaccatcgtc
tacgtgccgaccgtcaagctggcctcgtcggtgcacgaacgcctgtcggcacgggatccg
ggcacgccgatcggcctctatcacgggcggctcgggcgcgcagcgcgtcacgcctcgcac
gacgccttcatgagcggcgaggtgtccctcatggtggcgaccaacgcgttcggcctcggc
atcgacaagcccgacatccgcgccatcgtccacgtcgggctgccgggctcgctcgagcag
tactaccaggaggcgggccgcgccggtcgggatggcgagccggcccgctgcgtcctgctg
cacgccccgcacgaccgacgcctgcagcgctacttcatcggcggcgtcgcgcgtggcgac
gacgccgatccggaggccagcggggcccgacgcgaggccgacgtggcgcgcctcgaccgc
ctcgtcgcctgggcacagtctggcctctgccgctgggcgcaggtcctcgactacttcggc
gagacgctaccggaccagcgctgtggccactgcgacaactgcgaccgcctgctggaacgg
ccgctgccggtcgcggcgccggaggccgtccggcgcaccgccctgccggacccggccccg
gcgaccgccggcctgcgcgcgggcgtggtcgtgagcacggcacacggccccggcgaggtg
gtcgccgtgcacgacgacaaggtggacgtgcgcagccccgacggcaccgtgcgtaccttc
agcgcgacgttcgtgacgccggcctag
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