Luteitalea sp. TBR-22: TBR22_A38480
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Entry
TBR22_A38480 CDS
T09892
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lub
Luteitalea sp. TBR-22
Pathway
lub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TBR22_A38480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lub03021
]
TBR22_A38480 (rpoC)
03400 DNA repair and recombination proteins [BR:
lub03400
]
TBR22_A38480 (rpoC)
Enzymes [BR:
lub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TBR22_A38480 (rpoC)
Transcription machinery [BR:
lub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TBR22_A38480 (rpoC)
DNA repair and recombination proteins [BR:
lub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TBR22_A38480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
DUF4026_C
Motif
Other DBs
NCBI-ProteinID:
BCS34620
LinkDB
All DBs
Position
complement(4548685..4552902)
Genome browser
AA seq
1405 aa
AA seq
DB search
MRPDFSTKGTLTADFDSIRISLASPDKIRQWSYGEVTKPETINYRTFKPERDGLFCARIF
GPVTDWECLCGKYKRMKHRGVICDKCGVEVTQARVRRERMGHIELATPVSHVWFFKGLPS
RIGHLLDISLRDLERVLYFEAYVVIEPGDTELKQNELLNEDQYRKAREEYGFTAFTAQMG
AEAIKSLLRNVDIETLAVELREKMKTEQSIQKRQKYAKRLKVVDAFRKSSNRPEWMILDV
IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMELKAPDVIIRNEKRMLQE
AVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEL
KLHQCGLPKKMALELFKPFIYNKLEERGLVATIKQAKEMVEEQRSEVWDVLEECIKEHPV
LLNRAPTLHRLGIQAFEPVLVEGKAIRIHPLVCTAFNADFDGDQMAVHIPLSPEAQIEAS
VLMLSSNNILSPANGAPIAVPSQDIVLGCYYLTKSKTGAIGEGRLFANLDDVVLALENGE
LETLTPIRLRYSGDLIDLTVARDDQAVLHTPLHTVERRIINTTVGRVIWNSSLPPEMPFI
NGLLKKKGLQQAVQYCYLHFGLEKTVQMLDSLKTLGFTYATRSGLSIGINDLIIPSVKAE
LVNHAEAEVIKVEQQYQEGAITNGERYNKVIALWSDATEKIADKMFGEMEERDRSGSSFN
PVYIMADSGARGSKQQIRQLAGMRGLMAKPSGEIIETPIKSNFREGLTVLQYFISTHGAR
KGLADTALKTADSGYLTRRLVDVAQDVIIHETDCGTMDGIEARPIVEAGETIEPLRDRII
GRVTLEDVIDPITREVLVKASEEITEDLATVVQEAGIEMVKIRSVLTCASRRGVCAKCYG
RDLATGRMVEMGLAVGVVAAQSIGEPGTQLTMRTFHIGGTASRISEQSTQESRHAGTVRF
ENISAVETGVEGGIRDMVVMNRNGSLVVRDNKGRDVEHYQVIYGARLRVTDGQKIEPGQV
LLEWDPFTFSILTEEAGTVKFKDIIPDVTVHEEVDEVTGMSRRIIIEGIDEKKQPLVEIR
NLDGKVLRKYHIPSHAHLMVEDGDAVTPGAVLAKIPRETTKTKDITGGLPRVVELFEARK
PREAAAVISEIDGIVKIGGIVKGQRKVMIVPEEEGGEPREYSLPRGVHVNVQDGDRVRAG
EQLMDGPSNPHDILAVLGERELQKYLVNEIQEVYRLQGVNINDKHIEVIVRQMMRWVKIE
DVGDTEFLIDDVVDRFRFIEENERVVTAGGVPAKGRPMLLGITKASLSTDSFISAASFQE
TTRVLTEASISGRVDTLRGLKENVTMGRLIPAGTGFYAYGNVHIPSDAPPPPPPPSPEDA
ELERDLDYLSDADDLLDRERGEVVE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgagaccagacttctcgaccaagggcaccctgaccgccgacttcgactcgatccggatc
agcctggcctcgccagacaagatccggcagtggtcctacggtgaggtcaccaagcccgag
acgatcaactaccgcacgttcaagccggaacgggatggcctgttctgtgcccggatcttc
ggaccggtcaccgactgggaatgcctctgcggcaagtacaagcggatgaagcaccgcggc
gtcatctgcgacaagtgcggcgtcgaggtgacccaggcccgtgtccgccgcgagcggatg
gggcacatcgagctggccacgccggtcagccacgtgtggttcttcaaggggctgcccagc
cgcatcgggcacctcctcgacatctcgctgcgcgacctcgagcgcgtcctctacttcgag
gcgtacgtggtcatcgagccgggtgacaccgagctcaagcagaacgagctgctcaacgag
gaccagtaccgcaaggcgcgcgaggagtacggcttcacggcgttcacggcgcagatgggc
gccgaggcgatcaagagcctgctccgcaacgtcgacatcgagaccctcgcggtggaactg
cgcgagaagatgaagaccgagcagtcgatccagaagcgccagaagtacgccaagcgcctc
aaggtggtcgacgcgttccgcaagagcagcaaccgcccggagtggatgatcctggacgtg
atcccggtgatcccgcccgagctgcgcccgctcgtgccgctcgacggtggccgcttcgcg
acctccgacctcaacgatctctatcgtcgcgtcatcaaccgcaacaaccggttgaagaag
ctgatggagctcaaggcgcccgacgtcatcatccgcaacgagaagcgcatgcttcaggaa
gcggtcgatgcgctgttcgacaacgggcgtcgcggccgcgtgctgcgcggggccaacaac
cgcccgctcaagtcgctgtcggacacgctgaagggcaagcagggccggttccgccagaac
ctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtcgtcgggccggagctg
aagctccaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttcatc
tacaacaagctcgaggagcgcgggctggtcgccaccatcaagcaggccaaggagatggtg
gaggagcagcggtccgaggtgtgggacgtgctcgaggagtgcatcaaggagcacccggtg
ctcctcaaccgcgccccgacgctgcaccgcctcggcatccaggccttcgagccggtgctg
gtggaaggcaaggcgatccgcatccacccgctcgtctgcacggcgttcaacgccgacttc
gacggcgaccagatggcggtgcacatcccgctgtcgcccgaggcgcagatcgaggcctcg
gtgctgatgctctcgagcaacaacatcctgagcccggccaacggcgcgccgatcgccgtg
ccgtcgcaggacatcgtgctcgggtgctactacctgaccaagtcgaagaccggggcgatc
ggcgagggccggctgtttgccaacctcgacgacgtggtgctggcgctggagaacggcgaa
ctcgagacgctcacgccgatccgcctgcgctacagcggcgacctgatcgacctgaccgtc
gcccgcgacgaccaggccgtgctgcacacgccgctgcacacggtggagcgccgcatcatc
aacaccaccgtcggccgcgtgatctggaacagctcgctgccgcccgagatgccgttcatc
aacggcctgctgaagaagaagggcctgcagcaggcggtgcagtactgctacctgcacttc
ggtctcgagaagaccgtgcagatgctcgacagcctgaagacgctcggcttcacgtacgcg
acgcggtcgggcctgtcgatcggcatcaacgacctgatcatcccgtcggtgaaggccgag
ctggtcaaccacgccgaggcggaggtgatcaaggtcgagcagcagtaccaggaaggcgcc
atcaccaacggcgagcgctacaacaaggtgatcgccctctggtcggacgccaccgagaag
atcgccgacaagatgttcggcgagatggaggagcgcgaccgatcgggcagctccttcaac
ccggtctacatcatggccgactcgggcgcccgtggttccaagcagcagatccgccagctg
gcgggcatgcgcggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcaag
tcgaacttccgtgaagggctgaccgttctccagtacttcatctcgacgcacggcgcgcgc
aagggcctggccgacacggcgctcaagaccgccgactcgggttacctcacccgccggctg
gtcgacgtggcgcaggacgtcatcatccacgagaccgactgcggcacgatggacggcatc
gaggcccggccgatcgtcgaggccggcgagacgatcgagccgctgcgcgaccggatcatc
ggccgcgtcacgctcgaggacgtcatcgacccgatcacccgcgaggtgctggtgaaggcc
agcgaggagatcaccgaggatctcgccacggtggtccaggaagcgggcatcgagatggtc
aagatccgctccgtgctcacctgcgccagccggcgcggcgtgtgcgccaagtgctacggc
cgcgacctcgcgaccgggcgcatggtggagatgggcctggccgtcggcgtggtggccgcg
cagtcgatcggcgagcccggcacgcagctcacgatgcgcacgttccacatcggtggcacg
gcctcccgcatctccgagcagtcgacgcaggagtcacgccacgccggtaccgtgcggttc
gagaacatctcggccgtcgagaccggtgtcgagggcggcatccgcgacatggtcgtgatg
aaccgcaacggcagcctcgtggtgcgcgacaacaagggacgcgacgtggagcactaccag
gtgatctacggcgcccgcctgcgcgtcaccgacggccagaagatcgagcccggccaggtg
ctcctcgaatgggatccgttcacgttctccatcctcacggaggaggcgggcacggtgaag
ttcaaggacatcatccccgacgtcaccgtccacgaggaggtggacgaggtcacgggcatg
tcgcgccggatcatcatcgagggcatcgacgagaagaagcagccgctggtcgagatccgc
aacctcgatggcaaggtgctccggaagtaccacatcccgtcgcacgcccacctcatggtg
gaggacggcgatgcggtgaccccgggcgccgtgctcgcgaagatcccccgcgagacgacc
aagaccaaggacatcacgggcggtctgccgcgcgtggtggaactgttcgaggcccgcaag
ccccgcgaggcggcggccgtcatcagcgagatcgacggcatcgtcaagatcggcggcatc
gtcaagggccagcgcaaggtcatgatcgtccccgaggaagagggcggcgagccgcgggag
tacagcctgccccgtggcgtgcacgtcaacgtccaggacggcgatcgcgtccgggcgggc
gagcagctgatggacggcccgagcaacccgcacgacatcctcgcggtgctcggcgagcgg
gaactgcagaagtacctggtcaacgagatccaggaggtctaccgcctgcagggcgtcaac
atcaacgacaagcacatcgaggtcatcgttcgccagatgatgcggtgggtgaagatcgag
gatgtcggcgacaccgagttcctgatcgacgacgtggtggaccgcttccggttcatcgag
gagaacgagcgcgtggtgacggcaggcggcgtcccggccaagggccggccgatgctgctc
ggcatcaccaaggcctcgctctcgaccgactcgttcatctcggcggcctccttccaggag
accacgcgcgtgctcaccgaggcgtccatctccgggcgcgtcgacacgctgcgcggcctg
aaggagaacgtcacgatgggccgcctgattccggcgggcacgggcttctacgcctacggc
aacgtgcacatcccgtcggatgcgccgccgcccccgccgccgccgtccccggaggatgcg
gaactcgagcgcgatctcgactacctgtccgacgcggacgacctgctcgaccgcgaacgg
ggcgaagtggtcgagtaa
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integrated database retrieval system
