Luteitalea sp. TBR-22: TBR22_A48580
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Entry
TBR22_A48580 CDS
T09892
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lub
Luteitalea sp. TBR-22
Pathway
lub02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lub00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TBR22_A48580 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lub03021
]
TBR22_A48580 (rpoD)
Transcription machinery [BR:
lub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TBR22_A48580 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_20
PNK3P
Motif
Other DBs
NCBI-ProteinID:
BCS35624
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Position
5871100..5872815
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AA seq
571 aa
AA seq
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MSIEDKYDEVRHLIAIGKEKGYLLYDEVSEVLPADITSSAEELEDLFSTFGNAGIEVVES
EQKYREDKMLDRPDTGEEPELDLTPGALDKTNDPVRMYLREMGTVPLLTREGEVEIAKRI
ERGKLAVIKSISRTPTVAKKILEMGEQLKEGKRTIREIAIFTDEEVTEDRLEERAREVLK
QIESVKKAMLAFKAAEQKFVAIKKGKTKAELGKWRKARWSMLRKRVAISKCIRRIEFTEA
VKRRLIEEIKEQVEAVQKVQREADHIERQVNPTAKGRKVKLKEEEKKNLLKRQKDLRAAV
QQMSADLEETPERLRHTLETIYRGEVQAEQAKKELVEANLRLVVSIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLI
RTSRALVQELGREPTSEEIAQRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIE
DRNIVSPAEAVINLNLKEQTDDVLKTLTPREERVIKMRFGVGDGSEHTLEEVGQNFAVTR
ERIRQIEAKALRKLRHPSRSRKLKAFLEGRS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
gtgtccatcgaagacaagtacgacgaagtacgtcacctgatcgcgatcgggaaggagaag
ggctatctcctgtacgacgaggtcagtgaggtacttcctgccgacatcacctcgtcggcc
gaggaactcgaggacctgttcagcaccttcggcaacgccggcatcgaggtggtcgagtcc
gagcagaagtaccgcgaggacaagatgctcgaccgcccggacacgggcgaggagccggaa
ctcgacctcacgccgggggcactcgacaagaccaacgaccccgtccgcatgtacctgcgc
gagatgggcaccgtgccgctgctcacccgcgagggcgaggtggagatcgccaagcgcatc
gagcgcggcaagctggcggtgatcaagtcgatttcgcgcacgccgaccgtcgccaagaag
atcctggagatgggcgagcagctgaaggaaggcaagcgcaccatccgcgagatcgccatc
ttcaccgacgaagaagtcaccgaggatcgcctcgaggagcgggcccgcgaggtcctcaag
cagatcgagtcggtcaagaaggcgatgctggccttcaaggccgccgaacagaagttcgtc
gcgatcaagaagggcaagacgaaggcggaactcggcaagtggcgcaaggcgcgctggtcg
atgctccgcaagcgcgtcgcgatctccaagtgcatccgccggatcgagttcaccgaggcc
gtcaagcgccgcctgatcgaggagatcaaggagcaggtcgaggcggtgcagaaggtgcag
cgcgaggccgaccacatcgagcggcaggtcaacccgacggccaagggccggaaggtgaag
ctgaaggaagaggagaagaagaacctcctcaagcgccagaaggacctgcgcgccgccgtg
cagcagatgtcggccgacctcgaggagacgccggagcggctgcgccacacgctcgagacg
atctaccgcggcgaggtgcaggccgagcaggccaagaaggaactggtcgaggccaacctg
cgcctcgtggtgtcgatcgccaagaagtacaccaaccgcgggctgcagttcctcgacctg
atccaggaaggcaacatcggcctgatgaaggccgtggacaagttcgagtaccgccgcggc
tacaagttctcgacctacgcgacgtggtggatccggcaggccatcacccgcgcgatcgcc
gatcaggcgcgcaccatccgcatcccggtgcacatgatcgagacgatcaacaagctgatc
cgcacctcgcgtgccctggtgcaggaactcgggcgcgagccgacctccgaggagatcgcg
cagcggatggacatccccgtcgcgaaggtccgcaaggtcctcaagatcgcgcaggagccc
atctcgctcgagactccgatcggcgaggaagaggactcgcacctcggtgacttcatcgag
gaccgcaacatcgtgtcgcctgccgaggccgtcatcaacctgaacctcaaggaacagacc
gatgacgtgctgaagacgctgacgccacgcgaggagcgcgtgatcaagatgcgcttcggc
gtcggcgacggcagcgagcacacgctcgaggaggtcggccagaacttcgcggtcacccgc
gagcgcatccggcagatcgaggccaaggcgctgcgcaagctgcgccacccgtcgcgcagc
cgcaagctgaaggcgttcctcgagggacgctcctga
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